Histopathology data for Shank1

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #5 Salivary gland [MA:0000346]
HOM F #1 Small intestine [MA:0000337]
HOM M #4 Stomach [MA:0000353]
HOM F #3 Tongue [MA:0000347]
HOM F #6 Tongue [MA:0000347]
HOM F #3 Lung [MA:0000415]
HOM M #2 Femur [MA:0001359]
HOM F #6 Lung [MA:0000415]
HOM M #2 Spinal cord [MA:0000216]
HOM F #7 Knee joint [MA:0000471]
HOM F #7 Tooth [MA:0000348]
HOM M #4 Kidney [MA:0000368]
HOM M #4 Sternum [MA:0001331]
HOM M #4 Lung [MA:0000415]
HOM F #1 Femur [MA:0001359]
HOM F #3 Esophagus [MA:0000352]
HOM M #2 Adrenal gland [MA:0000116]
HOM F #6 Esophagus [MA:0000352]
HOM M #4 Tongue [MA:0000347]
HOM F #3 Heart [MA:0000072]
HOM F #6 Heart [MA:0000072]
HOM F #6 Sternum [MA:0001331]
HOM M #4 Epididymis [MA:0000397]
HOM F #3 Sciatic nerve [MA:0001172]
HOM M #5 Sciatic nerve [MA:0001172]
HOM M #2 Seminal vesicle [MA:0000410] 2 0 Seminal vesicle, unilateral: Moderate dilation with epithelial attenuation
HOM F #1 Tooth [MA:0000348]
HOM M #8 Epididymis [MA:0000397]
HOM M #4 Brain [MA:0000168]
HOM F #7 Thyroid
HOM M #4 Esophagus [MA:0000352]
HOM M #5 Trigeminal V ganglion [MA:0001080]
HOM F #7 Mammary gland [MA:0000145]
HOM F #6 Spleen [MA:0000141]
HOM F #3 Spleen [MA:0000141]
HOM M #2 Thymus [MA:0000142]
HOM F #7 Bone [MA:0001459]
HOM M #8 Pancreas [MA:0000120]
HOM M #2 Small intestine [MA:0000337]
HOM M #5 Gall bladder [MA:0000356]
HOM F #7 Eye [MA:0000261]
HOM F #3 Gall bladder [MA:0000356]
HOM M #2 Urinary bladder [MA:0000380]
HOM F #7 Pancreas [MA:0000120]
HOM M #2 Prostate gland [MA:0000404]
HOM F #1 Pancreas [MA:0000120]
HOM F #1 Skeletal muscle [MA:0003148]
HOM M #4 Lymph node [MA:0000139]
HOM F #6 Gall bladder [MA:0000356]
HOM M #5 Tibia [MA:0001361]
HOM M #5 Brown adipose tissue [MA:0000057]
HOM M #5 Brain [MA:0000168]
HOM F #1 Urinary bladder [MA:0000380]
HOM M #5 Esophagus [MA:0000352]
HOM F #1 Bone marrow [MA:0000134]
HOM M #5 Small intestine [MA:0000337]
HOM M #2 Skin [MA:0000151]
HOM M #8 Knee joint [MA:0000471]
HOM F #1 Spleen [MA:0000141]
HOM M #8 Lung [MA:0000415]
HOM F #3 Ovary [MA:0000384]
HOM M #8 Stomach [MA:0000353]
HOM F #3 Kidney [MA:0000368]
HOM M #2 Skeletal muscle [MA:0003148]
HOM F #1 Brown adipose tissue [MA:0000057]
HOM M #8 Heart [MA:0000072]
HOM F #1 Salivary gland [MA:0000346]
HOM M #5 Lymph node [MA:0000139] 1 0 Mesenteric lymph node: Mild, paracortical hyperplasia
HOM F #6 Nasal cavity [MA:0000284]
HOM M #2 Trigeminal V ganglion [MA:0001080]
HOM F #3 Lymph node [MA:0000139] 1 0 Lymph nodes, multifocal: Mild to moderate, follicular and paracortical hyperplasia
HOM M #5 Tongue [MA:0000347]
HOM M #2 Tibia [MA:0001361]
HOM F #6 Stomach [MA:0000353]
HOM F #6 Trachea [MA:0000441]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM M #4 Spleen [MA:0000141]
HOM F #3 Salivary gland [MA:0000346] 2 0 Submandibular salivary gland: Moderate, multifocal to coalescing mononuclear cellular infiltrate
HOM F #3 Brain [MA:0000168]
HOM F #7 Sternum [MA:0001331]
HOM M #5 Epididymis [MA:0000397]
HOM M #2 Gall bladder [MA:0000356]
HOM M #2 Thyroid
HOM M #4 Testis [MA:0000411]
HOM F #1 Lung [MA:0000415]
HOM M #5 Seminal vesicle [MA:0000410] 2 0 Seminal vesicle, unilateral: Moderate, dilation with epithelial attenuation
HOM M #5 Urinary bladder [MA:0000380]
HOM M #5 Kidney [MA:0000368] 1 0 Kidney, unilateral: Suspect mild to moderate hydronephrosis with urothelial attenuation
HOM M #5 Sternum [MA:0001331]
HOM F #6 Tibia [MA:0001361]
HOM F #6 Mammary gland [MA:0000145]
HOM F #3 Brown adipose tissue [MA:0000057]
HOM M #2 Sciatic nerve [MA:0001172]
HOM F #3 Thymus [MA:0000142]
HOM M #8 Thyroid
HOM F #1 Large intestine [MA:0000333]
HOM F #7 Large intestine [MA:0000333]
HOM F #6 Pancreas [MA:0000120]
HOM M #8 Gall bladder [MA:0000356]
HOM M #2 Lymph node [MA:0000139] 2 0 Lymph node, multifocal: Moderate, paracortical hyperplasia
HOM F #3 Trigeminal V ganglion [MA:0001080]
HOM M #4 Thymus [MA:0000142]
HOM M #5 Spinal cord [MA:0000216]
HOM M #8 Brain [MA:0000168]
HOM F #7 Ear [MA:0000236]
HOM M #4 Small intestine [MA:0000337]
HOM M #4 Salivary gland [MA:0000346]
HOM M #2 Bone marrow [MA:0000134]
HOM M #4 Knee joint [MA:0000471]
HOM F #6 Brown adipose tissue [MA:0000057]
HOM M #5 Femur [MA:0001359]
HOM M #8 Salivary gland [MA:0000346]
HOM M #2 Esophagus [MA:0000352]
HOM M #2 Bone [MA:0001459]
HOM F #7 Spinal cord [MA:0000216]
HOM M #4 Tooth [MA:0000348]
HOM F #7 Femur [MA:0001359]
HOM F #7 Ovary [MA:0000384]
HOM M #8 Testis [MA:0000411]
HOM M #4 Nasal cavity [MA:0000284]
HOM M #8 Sternum [MA:0001331]
HOM M #5 Liver [MA:0000358]
HOM M #2 Heart [MA:0000072]
HOM M #4 Trachea [MA:0000441]
HOM M #5 Heart [MA:0000072]
HOM M #2 Liver [MA:0000358]
HOM M #8 Adrenal gland [MA:0000116]
HOM F #7 Small intestine [MA:0000337]
HOM F #1 Sternum [MA:0001331]
HOM F #1 Spinal cord [MA:0000216]
HOM F #3 Eye [MA:0000261]
HOM F #1 Kidney [MA:0000368]
HOM F #6 Ovary [MA:0000384]
HOM M #4 Brown adipose tissue [MA:0000057]
HOM F #6 Kidney [MA:0000368]
HOM F #1 Nasal cavity [MA:0000284]
HOM F #7 Brain [MA:0000168]
HOM M #4 Ear [MA:0000236]
HOM F #3 Stomach [MA:0000353] 2 0 Stomach, glandular: Moderate, regionally extensive, hyaline droplet accumulation with intra- and extracellular eosinophilic crystal formation
HOM F #7 Tibia [MA:0001361]
HOM F #6 Adrenal gland [MA:0000116]
HOM M #8 Tongue [MA:0000347]
HOM F #3 Nasal cavity [MA:0000284]
HOM F #3 Knee joint [MA:0000471]
HOM F #6 Small intestine [MA:0000337]
HOM F #7 Adrenal gland [MA:0000116]
HOM F #6 Salivary gland [MA:0000346]
HOM F #3 Tooth [MA:0000348]
HOM F #3 Trachea [MA:0000441]
HOM M #8 Kidney [MA:0000368]
HOM F #7 Kidney [MA:0000368]
HOM M #8 Tibia [MA:0001361]
HOM F #6 Brain [MA:0000168]
HOM F #7 Tongue [MA:0000347]
HOM F #3 Ear [MA:0000236]
HOM F #1 Uterus [MA:0000389]
HOM F #7 Trigeminal V ganglion [MA:0001080]
HOM M #5 Tooth [MA:0000348] 1 0 Oral cavity: Mild odontogenic dysplasia
HOM F #1 Tibia [MA:0001361]
HOM M #4 Large intestine [MA:0000333]
HOM M #5 Bone [MA:0001459]
HOM F #6 Uterus [MA:0000389]
HOM F #3 Uterus [MA:0000389]
HOM M #5 Knee joint [MA:0000471]
HOM F #3 Skeletal muscle [MA:0003148]
HOM F #1 Mammary gland [MA:0000145]
HOM M #8 Brown adipose tissue [MA:0000057]
HOM M #2 Epididymis [MA:0000397] 1 0 Epididymis: Mild, multifocal epithelial vacuolation and karyomegaly
HOM F #7 Salivary gland [MA:0000346] 1 0 Salivary gland (submandibular, sublingual): Mild, multifocal mononuclear cellular infiltrate
HOM F #3 Skin [MA:0000151]
HOM M #8 Small intestine [MA:0000337]
HOM F #6 Skin [MA:0000151]
HOM F #3 Bone marrow [MA:0000134]
HOM M #5 Testis [MA:0000411]
HOM M #4 Skin [MA:0000151]
HOM F #1 Ear [MA:0000236]
HOM F #6 Bone marrow [MA:0000134]
HOM M #4 Adrenal gland [MA:0000116]
HOM F #1 Thymus [MA:0000142]
HOM M #4 Seminal vesicle [MA:0000410]
HOM F #7 Gall bladder [MA:0000356]
HOM M #5 Pancreas [MA:0000120] 1 0 Pancreas: Subjectively enlarged and increased numbers of islets
HOM M #5 Eye [MA:0000261]
HOM F #7 Thymus [MA:0000142]
HOM F #6 Skeletal muscle [MA:0003148]
HOM M #2 Sternum [MA:0001331]
HOM M #8 Urinary bladder [MA:0000380]
HOM F #1 Skin [MA:0000151]
HOM M #5 Thyroid
HOM F #1 Liver [MA:0000358]
HOM F #1 Ovary [MA:0000384]
HOM M #8 Femur [MA:0001359]
HOM M #8 Spinal cord [MA:0000216]
HOM M #8 Thymus [MA:0000142]
HOM F #6 Large intestine [MA:0000333]
HOM F #7 Sciatic nerve [MA:0001172]
HOM F #3 Thyroid
HOM M #4 Urinary bladder [MA:0000380]
HOM F #7 Brown adipose tissue [MA:0000057]
HOM F #1 Brain [MA:0000168]
HOM F #6 Ear [MA:0000236]
HOM F #3 Large intestine [MA:0000333]
HOM M #8 Seminal vesicle [MA:0000410]
HOM M #4 Prostate gland [MA:0000404]
HOM M #4 Spinal cord [MA:0000216]
HOM M #2 Tongue [MA:0000347]
HOM F #6 Thyroid
HOM M #4 Eye [MA:0000261]
HOM M #8 Large intestine [MA:0000333]
HOM F #7 Nasal cavity [MA:0000284]
HOM M #2 Brain [MA:0000168]
HOM M #2 Pancreas [MA:0000120]
HOM M #5 Bone marrow [MA:0000134]
HOM M #4 Thyroid
HOM F #6 Spinal cord [MA:0000216]
HOM F #3 Bone [MA:0001459]
HOM M #5 Prostate gland [MA:0000404]
HOM M #4 Femur [MA:0001359]
HOM F #6 Femur [MA:0001359]
HOM F #1 Stomach [MA:0000353]
HOM F #6 Eye [MA:0000261]
HOM M #4 Skeletal muscle [MA:0003148]
HOM F #7 Heart [MA:0000072]
HOM F #7 Liver [MA:0000358]
HOM M #2 Kidney [MA:0000368]
HOM F #7 Lung [MA:0000415]
HOM F #6 Tooth [MA:0000348]
HOM M #4 Tibia [MA:0001361]
HOM F #7 Trachea [MA:0000441]
HOM F #3 Urinary bladder [MA:0000380]
HOM F #7 Stomach [MA:0000353]
HOM F #3 Adrenal gland [MA:0000116]
HOM F #3 Small intestine [MA:0000337]
HOM M #8 Liver [MA:0000358]
HOM F #6 Knee joint [MA:0000471]
HOM M #5 Adrenal gland [MA:0000116]
HOM M #2 Spleen [MA:0000141]
HOM F #1 Tongue [MA:0000347]
HOM M #8 Nasal cavity [MA:0000284]
HOM F #7 Spleen [MA:0000141]
HOM M #8 Lymph node [MA:0000139]
HOM M #8 Eye [MA:0000261]
HOM M #8 Bone marrow [MA:0000134]
HOM M #8 Sciatic nerve [MA:0001172]
HOM F #3 Pancreas [MA:0000120]
HOM F #1 Sciatic nerve [MA:0001172]
HOM M #2 Trachea [MA:0000441]
HOM M #2 Eye [MA:0000261]
HOM M #8 Skeletal muscle [MA:0003148]
HOM F #6 Thymus [MA:0000142]
HOM F #3 Tibia [MA:0001361]
HOM F #3 Mammary gland [MA:0000145]
HOM M #4 Pancreas [MA:0000120]
HOM F #6 Liver [MA:0000358]
HOM M #2 Nasal cavity [MA:0000284]
HOM F #3 Liver [MA:0000358]
HOM F #7 Urinary bladder [MA:0000380]
HOM M #8 Trachea [MA:0000441]
HOM M #5 Spleen [MA:0000141]
HOM F #7 Uterus [MA:0000389]
HOM M #2 Knee joint [MA:0000471]
HOM M #8 Prostate gland [MA:0000404]
HOM M #4 Bone [MA:0001459]
HOM M #5 Large intestine [MA:0000333]
HOM M #8 Skin [MA:0000151]
HOM M #8 Tooth [MA:0000348]
HOM M #2 Salivary gland [MA:0000346]
HOM F #1 Eye [MA:0000261]
HOM F #7 Skeletal muscle [MA:0003148]
HOM M #2 Tooth [MA:0000348]
HOM M #8 Esophagus [MA:0000352]
HOM F #6 Trigeminal V ganglion [MA:0001080]
HOM M #2 Testis [MA:0000411]
HOM F #1 Gall bladder [MA:0000356]
HOM F #7 Skin [MA:0000151]
HOM F #7 Bone marrow [MA:0000134]
HOM M #8 Bone [MA:0001459]
HOM M #8 Trigeminal V ganglion [MA:0001080]
HOM M #5 Skeletal muscle [MA:0003148]
HOM M #2 Lung [MA:0000415]
HOM M #5 Thymus [MA:0000142]
HOM M #5 Skin [MA:0000151]
HOM M #8 Spleen [MA:0000141]
HOM F #1 Esophagus [MA:0000352]
HOM F #7 Esophagus [MA:0000352]
HOM M #2 Ear [MA:0000236]
HOM M #5 Ear [MA:0000236]
HOM F #1 Knee joint [MA:0000471]
HOM F #6 Bone [MA:0001459]
HOM M #2 Stomach [MA:0000353]
HOM M #4 Bone marrow [MA:0000134]
HOM F #6 Lymph node [MA:0000139]
HOM F #1 Trigeminal V ganglion [MA:0001080]
HOM F #6 Sciatic nerve [MA:0001172]
HOM F #1 Heart [MA:0000072]
HOM M #2 Brown adipose tissue [MA:0000057]
HOM F #1 Lymph node [MA:0000139]
HOM F #3 Femur [MA:0001359]
HOM M #4 Sciatic nerve [MA:0001172]
HOM F #3 Spinal cord [MA:0000216]
HOM F #1 Trachea [MA:0000441]
HOM F #1 Adrenal gland [MA:0000116]
HOM F #3 Sternum [MA:0001331]
HOM M #5 Trachea [MA:0000441]
HOM M #5 Stomach [MA:0000353]
HOM F #1 Bone [MA:0001459]
HOM M #2 Large intestine [MA:0000333]
HOM M #4 Heart [MA:0000072]
HOM M #4 Liver [MA:0000358]
HOM F #6 Urinary bladder [MA:0000380]
HOM F #7 Lymph node [MA:0000139] 2 0 Mesenteric lymph node: Moderate, paracortical hyperplasia
HOM F #1 Thyroid
HOM M #5 Lung [MA:0000415]
HOM M #5 Nasal cavity [MA:0000284]

Associated histopathology images

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