IMPC Data Release 18.0 Notes

IMPC

  • Release: 18.0
  • Published: 28 November 2022

Statistical Package

Genome Assembly

Summary

  • Number of phenotyped genes: 8,368
  • Number of phenotyped mutant lines: 9,018
  • Number of phenotype calls: 99,148

Data access

  • Ftp interface: ftp
  • RESTful interfaces: APIs

Highlights

Data release 18.0

Release notes:

Represents a major data release.
This release

  • Includes approximately 1.35 million more data points.
  • Fixes an issue displaying gross pathology charts for the alternative data pipeline.
  • Fixes the display of normal observations for gross pathology data.
  • Resolves an issue impacting some gene pages, such as Rfc1.

Data Reports

Total Number of Lines and Specimens in DR 18.0

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
TCP 713 9,019 29,741
JAX 1,908 15,092 55,731
HMGU 495 6,341 9,602
CCP-IMG 266 2,912 4,923
MRC Harwell 841 7,501 20,681
MARC 233 1,858 3,588
KMPC 74 2,071 2,546
RBRC 108 2,149 2,448
ICS 239 2,619 3,882
WTSI 1,612 5,364 18,660
UC Davis 1,498 9,003 37,792
BCM 1,032 8,285 30,362

Experimental Data and Quality Checks

Data Type QC Passed Data Points
categorical 24,660,090
image record 737,960
time series 25,287,130
ontological 1,826,470
text 552,346
unidimensional 20,653,136

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Production Status

Overall

By Center

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More charts and status information are available from our mouse tracking service GenTaR.

Phenotype Associations

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Trends

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Previous Releases

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