Histopathology data for Arhgef5

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM F #4 Kidney [MA:0000368] 0 0
HOM F #4 Adrenal gland [MA:0000116] 0 0
HOM F #4 Epididymis [MA:0000397] Not applicable
HOM F #4 Sternum [MA:0001331] 0 0
HOM F #4 Seminal vesicle [MA:0000410] Not applicable
HOM F #4 Large intestine [MA:0000333] 0 0
HOM M #3 Ovary [MA:0000384] Not applicable
HOM M #3 Spinal cord [MA:0000216] 0 0
HOM M #2 Thymus [MA:0000142] 0 0
HOM F #1 Small intestine [MA:0000337] 0 0
HOM M #2 Mammary gland [MA:0000145] Not applicable
HOM M #2 Liver [MA:0000358] 0 0
HOM F #4 Spleen [MA:0000141] 0 0
HOM M #2 Pancreas [MA:0000120] 0 0
HOM F #4 Urinary bladder [MA:0000380] 0 0
HOM M #3 Femur [MA:0001359] 0 0
HOM M #3 Epididymis [MA:0000397] 0 0
HOM M #3 Kidney [MA:0000368] 0 0
HOM F #4 Lung [MA:0000415] 0 0
HOM M #3 Spleen [MA:0000141] 0 0
HOM F #4 Heart [MA:0000072] 0 0
HOM F #1 Liver [MA:0000358] 0 0
HOM M #3 Large intestine [MA:0000333] 0 0
HOM F #4 Stomach [MA:0000353] 0 0
HOM F #4 Tongue [MA:0000347] 0 0
HOM M #3 Lung [MA:0000415] 0 0
HOM M #2 Thyroid 0 0
HOM F #1 Sternum [MA:0001331] 0 0
HOM F #1 Kidney [MA:0000368] 0 0
HOM F #1 Spleen [MA:0000141] 0 0
HOM M #2 Gall bladder [MA:0000356] 0 0
HOM F #4 Thymus [MA:0000142] 0 0
HOM F #4 Mammary gland [MA:0000145] 0 0
HOM M #3 Stomach [MA:0000353] 0 0
HOM M #3 Mammary gland [MA:0000145] Not applicable
HOM M #3 Thymus [MA:0000142] 0 0
HOM M #2 Spinal cord [MA:0000216] 0 0
HOM M #2 Epididymis [MA:0000397] 0 0
HOM M #3 Skin [MA:0000151] 0 0
HOM M #3 Liver [MA:0000358] 0 0
HOM M #3 Skeletal muscle [MA:0003148] 0 0
HOM M #3 Heart [MA:0000072] 0 0
HOM F #1 Tooth [MA:0000348] 0 0
HOM M #2 Femur [MA:0001359] 0 0
HOM M #2 Eye [MA:0000261] 0 0
HOM M #3 Pancreas [MA:0000120] 0 0
HOM F #4 Femur [MA:0001359] 0 0
HOM F #1 Thyroid 0 0
HOM M #2 Sternum [MA:0001331] 0 0
HOM F #1 Gall bladder [MA:0000356] 0 0
HOM M #3 Sternum [MA:0001331] 0 0
HOM F #4 Pancreas [MA:0000120] 0 0
HOM F #4 Spinal cord [MA:0000216] 0 0
HOM M #2 Nasal cavity [MA:0000284] 0 0
HOM F #4 Gall bladder [MA:0000356] 0 0
HOM F #4 Thyroid 0 0
HOM F #1 Thymus [MA:0000142] 0 0
HOM F #1 Skin [MA:0000151] 0 0
HOM M #2 Trachea [MA:0000441] 0 0
HOM F #1 Mammary gland [MA:0000145] 0 0
HOM M #2 Stomach [MA:0000353] 0 0
HOM F #1 Epididymis [MA:0000397] Not applicable
HOM M #2 Tooth [MA:0000348] 0 0
HOM F #4 Eye [MA:0000261] 0 0
HOM F #1 Skeletal muscle [MA:0003148] 0 0
HOM F #1 Spinal cord [MA:0000216] 0 0
HOM M #3 Tooth [MA:0000348] 0 0
HOM F #4 Skeletal muscle [MA:0003148] 0 0
HOM F #1 Pancreas [MA:0000120] 0 0
HOM F #4 Skin [MA:0000151] 0 0
HOM F #1 Femur [MA:0001359] 0 0
HOM F #1 Eye [MA:0000261] 0 0
HOM F #1 Bone marrow [MA:0000134] 0 0
HOM M #2 Tongue [MA:0000347] 0 0
HOM M #3 Gall bladder [MA:0000356] 0 0
HOM M #3 Thyroid 0 0
HOM F #1 Esophagus [MA:0000352] 0 0
HOM M #2 Uterus [MA:0000389] Not applicable
HOM M #2 Prostate gland [MA:0000404] 0 0
HOM M #3 Trachea [MA:0000441] 0 0
HOM M #2 Lung [MA:0000415] 0 0
HOM M #2 Skeletal muscle [MA:0003148] 0 0
HOM M #3 Nasal cavity [MA:0000284] 0 0
HOM F #4 Testis [MA:0000411] Not applicable
HOM M #3 Optic II nerve [MA:0001097] 0 0
HOM F #4 Salivary gland [MA:0000346] 0 0
HOM F #1 Brain [MA:0000168] 0 0
HOM M #3 Lymph node [MA:0000139] 0 0
HOM M #2 Skin [MA:0000151] 0 0
HOM F #1 Ear [MA:0000236] 0 0
HOM M #2 Esophagus [MA:0000352] 0 0
HOM M #2 Bone marrow [MA:0000134] 0 0
HOM M #3 Sciatic nerve [MA:0001172] 0 0
HOM M #2 Heart [MA:0000072] 0 0
HOM M #3 Eye [MA:0000261] 0 0
HOM F #4 Tooth [MA:0000348] 0 0
HOM F #1 Lung [MA:0000415] 0 0
HOM F #1 White adipose tissue [MA:0000058] 2 0 localized subacute Panniculitis
HOM F #4 Trachea [MA:0000441] 0 0
HOM M #2 Spleen [MA:0000141] 0 0
HOM F #1 Trachea [MA:0000441] 0 0
HOM F #4 Optic II nerve [MA:0001097] 0 0
HOM F #4 Nasal cavity [MA:0000284] 0 0
HOM F #1 Stomach [MA:0000353] 0 0
HOM F #1 Nasal cavity [MA:0000284] 0 0
HOM F #1 Lymph node [MA:0000139] 0 0
HOM F #1 Heart [MA:0000072] 0 0
HOM F #1 Optic II nerve [MA:0001097] 0 0
HOM M #3 Ear [MA:0000236] 0 0
HOM F #4 Lymph node [MA:0000139] 0 0
HOM M #2 Large intestine [MA:0000333] 0 0
HOM F #1 Tongue [MA:0000347] 0 0
HOM M #2 Ear [MA:0000236] 0 0
HOM M #3 Prostate gland [MA:0000404] 0 0
HOM F #4 Bone marrow [MA:0000134] 0 0
HOM F #4 Small intestine [MA:0000337] 0 0
HOM F #1 Seminal vesicle [MA:0000410] Not applicable
HOM F #1 Adrenal gland [MA:0000116] 0 0
HOM M #3 Uterus [MA:0000389] Not applicable
HOM M #2 Optic II nerve [MA:0001097] 0 0
HOM F #4 Esophagus [MA:0000352] 0 0
HOM F #4 Liver [MA:0000358] 0 0
HOM F #4 Brain [MA:0000168] 0 0
HOM F #1 Salivary gland [MA:0000346] 0 0
HOM F #4 Ear [MA:0000236] 0 0
HOM F #1 Testis [MA:0000411] Not applicable
HOM F #1 Large intestine [MA:0000333] 0 0
HOM F #4 Uterus [MA:0000389] 0 0
HOM M #2 Seminal vesicle [MA:0000410] 0 0
HOM M #2 Sciatic nerve [MA:0001172] 0 0
HOM F #1 Urinary bladder [MA:0000380] 0 0
HOM M #2 Ovary [MA:0000384] Not applicable
HOM M #3 Tongue [MA:0000347] 0 0
HOM F #4 Prostate gland [MA:0000404] Not applicable
HOM M #2 Kidney [MA:0000368] 0 0
HOM M #3 Bone marrow [MA:0000134] 0 0
HOM F #1 Prostate gland [MA:0000404] Not applicable
HOM M #3 Esophagus [MA:0000352] 0 0
HOM M #2 Testis [MA:0000411] 0 0
HOM M #3 Adrenal gland [MA:0000116] 0 0
HOM M #3 Seminal vesicle [MA:0000410] 0 0
HOM F #1 Uterus [MA:0000389] 0 0
HOM M #2 Lymph node [MA:0000139] 0 0
HOM M #2 Salivary gland [MA:0000346] 0 0
HOM M #2 Adrenal gland [MA:0000116] 0 0
HOM F #4 Sciatic nerve [MA:0001172] 0 0
HOM F #1 Ovary [MA:0000384] 0 0
HOM M #3 Small intestine [MA:0000337] 0 0
HOM F #4 Ovary [MA:0000384] 0 0
HOM M #3 Testis [MA:0000411] 0 0
HOM M #3 Brain [MA:0000168] 0 0
HOM M #2 Urinary bladder [MA:0000380] 0 0
HOM M #3 Urinary bladder [MA:0000380] 0 0
HOM F #1 Sciatic nerve [MA:0001172] 0 0
HOM M #3 Salivary gland [MA:0000346] 0 0
HOM M #2 Brain [MA:0000168] 0 0
HOM M #2 Small intestine [MA:0000337] 0 0

Associated histopathology images

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