Histopathology data for Sh3rf2

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #4 Knee joint [MA:0000471]
HOM F #3 Skeletal muscle [MA:0003148]
HOM F #1 Tongue [MA:0000347]
HOM M #2 Adrenal gland [MA:0000116]
HOM M #4 Skeletal muscle [MA:0003148]
HOM F #3 Trachea [MA:0000441]
HOM F #1 Lung [MA:0000415]
HOM F #3 Knee joint [MA:0000471]
HOM M #2 Thyroid
HOM M #2 Testis [MA:0000411]
HOM M #2 Gall bladder [MA:0000356]
HOM F #3 Lymph node [MA:0000139] 1 0 Lymph node, peripancreatic: Mild, lymphoid hyperplasia with sinus histiocytosis Lymph node, mesenteric: Mild, paracortical and follicular lymphoid hyperplasia with sinus histiocytosis
HOM F #3 Ovary [MA:0000384]
HOM M #4 Ear [MA:0000236]
HOM M #2 Kidney [MA:0000368]
HOM M #4 Trachea [MA:0000441]
HOM M #2 Spleen [MA:0000141]
HOM M #2 Sciatic nerve [MA:0001172]
HOM F #1 Thyroid
HOM M #4 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild, paracortical lymphoid hyperplasia
HOM F #1 Gall bladder [MA:0000356]
HOM M #4 Prostate gland [MA:0000404]
HOM F #1 Eye [MA:0000261]
HOM M #2 Large intestine [MA:0000333]
HOM F #1 Adrenal gland [MA:0000116]
HOM F #1 Nasal cavity [MA:0000284]
HOM M #4 Sternum [MA:0001331]
HOM M #4 Bone [MA:0001459]
HOM M #4 Adrenal gland [MA:0000116]
HOM F #3 Kidney [MA:0000368]
HOM F #3 Bone marrow [MA:0000134]
HOM F #3 Thymus [MA:0000142]
HOM F #1 Heart [MA:0000072]
HOM F #1 Spleen [MA:0000141]
HOM M #2 Nasal cavity [MA:0000284]
HOM M #2 Sternum [MA:0001331]
HOM F #1 Large intestine [MA:0000333]
HOM F #1 Trachea [MA:0000441]
HOM F #3 Brain [MA:0000168]
HOM M #4 Skin [MA:0000151]
HOM F #3 Sciatic nerve [MA:0001172]
HOM F #1 Esophagus [MA:0000352]
HOM F #3 Skin [MA:0000151]
HOM M #4 Lung [MA:0000415]
HOM M #4 Femur [MA:0001359]
HOM F #1 Trigeminal V ganglion [MA:0001080]
HOM F #3 Large intestine [MA:0000333]
HOM F #1 Sternum [MA:0001331]
HOM F #1 Urinary bladder [MA:0000380]
HOM M #4 Tongue [MA:0000347]
HOM M #4 Brain [MA:0000168]
HOM M #4 Thyroid
HOM M #4 Seminal vesicle [MA:0000410]
HOM F #1 Pancreas [MA:0000120]
HOM F #1 Liver [MA:0000358]
HOM M #4 Large intestine [MA:0000333]
HOM F #3 Uterus [MA:0000389]
HOM M #4 Small intestine [MA:0000337]
HOM F #1 Skeletal muscle [MA:0003148]
HOM F #3 Mammary gland [MA:0000145]
HOM F #3 Small intestine [MA:0000337]
HOM M #4 Spleen [MA:0000141]
HOM F #1 Ovary [MA:0000384]
HOM M #4 Pancreas [MA:0000120]
HOM M #4 Liver [MA:0000358]
HOM F #3 Spleen [MA:0000141] 1 0 Spleen, red pulp: Extramedullary hematopoiesis, mild increase
HOM F #1 Thymus [MA:0000142]
HOM M #2 Epididymis [MA:0000397]
HOM M #4 Kidney [MA:0000368]
HOM M #2 Eye [MA:0000261]
HOM F #1 Bone [MA:0001459]
HOM F #3 Ear [MA:0000236]
HOM M #2 Stomach [MA:0000353]
HOM F #1 Knee joint [MA:0000471]
HOM F #1 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild, follicular and paracortical lymphoid hyperplasia
HOM F #1 Spinal cord [MA:0000216]
HOM F #3 Salivary gland [MA:0000346]
HOM M #4 Thymus [MA:0000142]
HOM M #2 Bone marrow [MA:0000134]
HOM F #3 Femur [MA:0001359]
HOM F #1 Kidney [MA:0000368]
HOM F #3 Stomach [MA:0000353]
HOM M #2 Tooth [MA:0000348]
HOM F #3 Heart [MA:0000072]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM F #1 Uterus [MA:0000389] 2 0 Uterus: Moderate stromal edema
HOM M #2 Femur [MA:0001359]
HOM M #4 Spinal cord [MA:0000216]
HOM M #2 Brown adipose tissue [MA:0000057]
HOM F #1 Mammary gland [MA:0000145]
HOM M #4 Heart [MA:0000072]
HOM M #2 Skin [MA:0000151]
HOM M #4 Stomach [MA:0000353]
HOM F #1 Small intestine [MA:0000337]
HOM F #1 Skin [MA:0000151]
HOM M #2 Brain [MA:0000168]
HOM M #2 Liver [MA:0000358]
HOM M #4 Urinary bladder [MA:0000380]
HOM F #1 Brain [MA:0000168]
HOM M #2 Small intestine [MA:0000337]
HOM F #3 Liver [MA:0000358]
HOM F #3 Urinary bladder [MA:0000380]
HOM F #1 Ear [MA:0000236]
HOM M #2 Tibia [MA:0001361]
HOM F #3 Pancreas [MA:0000120]
HOM M #2 Esophagus [MA:0000352]
HOM F #1 Femur [MA:0001359]
HOM M #4 Esophagus [MA:0000352]
HOM F #1 Salivary gland [MA:0000346]
HOM F #3 Brown adipose tissue [MA:0000057]
HOM F #3 Eye [MA:0000261]
HOM M #2 Heart [MA:0000072]
HOM M #2 Trigeminal V ganglion [MA:0001080]
HOM F #3 Spinal cord [MA:0000216]
HOM M #4 Salivary gland [MA:0000346]
HOM F #3 Tooth [MA:0000348]
HOM M #2 Salivary gland [MA:0000346]
HOM F #3 Lung [MA:0000415]
HOM F #1 Tibia [MA:0001361]
HOM M #4 Nasal cavity [MA:0000284]
HOM M #4 Testis [MA:0000411]
HOM M #2 Thymus [MA:0000142]
HOM M #2 Ear [MA:0000236]
HOM F #3 Tongue [MA:0000347]
HOM M #4 Gall bladder [MA:0000356]
HOM F #1 Bone marrow [MA:0000134]
HOM M #2 Knee joint [MA:0000471]
HOM M #2 Spinal cord [MA:0000216]
HOM F #3 Tibia [MA:0001361]
HOM M #2 Lymph node [MA:0000139] 1 0 Lymph node, peripancreatic: Mild, lymphoid hyperplasia Lymph node, mesenteric: Mild, paracortical and follicular lymphoid hyperplasia
HOM F #3 Thyroid
HOM M #4 Tibia [MA:0001361]
HOM M #2 Bone [MA:0001459]
HOM F #3 Gall bladder [MA:0000356]
HOM M #2 Prostate gland [MA:0000404] 1 0 Prostate, dorsal lobe: Mild, focal, neutrophilic inflammation with granuloma formation
HOM M #4 Sciatic nerve [MA:0001172]
HOM F #3 Bone [MA:0001459]
HOM M #2 Urinary bladder [MA:0000380]
HOM F #1 Tooth [MA:0000348]
HOM M #4 Eye [MA:0000261]
HOM F #3 Adrenal gland [MA:0000116]
HOM M #2 Lung [MA:0000415]
HOM M #4 Brown adipose tissue [MA:0000057]
HOM F #3 Nasal cavity [MA:0000284]
HOM M #2 Tongue [MA:0000347]
HOM M #2 Trachea [MA:0000441]
HOM M #2 Seminal vesicle [MA:0000410]
HOM M #2 Skeletal muscle [MA:0003148]
HOM M #4 Epididymis [MA:0000397]
HOM F #3 Esophagus [MA:0000352]
HOM M #2 Pancreas [MA:0000120]
HOM F #1 Stomach [MA:0000353]
HOM F #1 Sciatic nerve [MA:0001172]
HOM M #4 Bone marrow [MA:0000134]
HOM F #1 Brown adipose tissue [MA:0000057]
HOM F #3 Trigeminal V ganglion [MA:0001080]
HOM M #4 Tooth [MA:0000348]
HOM F #3 Sternum [MA:0001331]

Associated histopathology images

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