Histopathology data for Raly

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #4 Optic II nerve [MA:0001097] 0 0
HOM M #1 Pancreas [MA:0000120] 0 0
HOM F #3 Small intestine [MA:0000337] normal [MPATH:458] 0 0
HOM M #1 Thymus [MA:0000142] 0 0
HOM F #3 Liver [MA:0000358] normal [MPATH:458] 0 0
HOM M #1 Mammary gland [MA:0000145] Not applicable
HOM F #2 Urinary bladder [MA:0000380] 0 0
HOM F #3 Mammary gland [MA:0000145] inflammation [MPATH:212] 1 0 chronic localized Panniculitis, chronic.
HOM F #3 Thymus [MA:0000142] normal [MPATH:458] 0 0
HOM F #2 Lymph node [MA:0000139] 0 0
HOM F #2 Liver [MA:0000358] 0 0
HOM M #1 Liver [MA:0000358] 0 0
HOM M #4 Testis [MA:0000411] 0 0
HOM F #2 Small intestine [MA:0000337] 0 0
HOM M #1 Testis [MA:0000411] 0 0
HOM F #2 Lung [MA:0000415] 0 0
HOM F #2 Ovary [MA:0000384] 0 0
HOM M #4 Trachea [MA:0000441] 0 0
HOM M #4 Salivary gland [MA:0000346] 0 0
HOM M #1 Small intestine [MA:0000337] 0 0
HOM F #2 Spleen [MA:0000141] 0 0
HOM M #4 Lymph node [MA:0000139] 0 0
HOM M #1 Salivary gland [MA:0000346] 0 0
HOM M #1 Thyroid 0 0
HOM M #4 Tongue [MA:0000347] 0 0
HOM M #1 Gall bladder [MA:0000356] 0 0
HOM F #3 Adrenal gland [MA:0000116] normal [MPATH:458] 0 0
HOM M #1 Femur [MA:0001359] 0 0
HOM F #3 Seminal vesicle [MA:0000410] Not applicable
HOM F #3 Urinary bladder [MA:0000380] normal [MPATH:458] 0 0
HOM F #3 Ovary [MA:0000384] normal [MPATH:458] 0 0
HOM M #4 Pancreas [MA:0000120] 0 0
HOM F #3 Salivary gland [MA:0000346] normal [MPATH:458] 0 0
HOM F #2 Pancreas [MA:0000120] 0 0
HOM M #4 Skin [MA:0000151] 0 0
HOM M #1 Optic II nerve [MA:0001097] 0 0
HOM M #1 Lymph node [MA:0000139] 0 0
HOM F #3 Large intestine [MA:0000333] normal [MPATH:458] 0 0
HOM F #2 Brain [MA:0000168] 0 0
HOM M #1 Epididymis [MA:0000397] 0 0
HOM M #1 Eye [MA:0000261] 0 0
HOM M #1 Kidney [MA:0000368] 0 0
HOM M #1 Spinal cord [MA:0000216] 0 0
HOM M #4 Mammary gland [MA:0000145] Not applicable
HOM M #4 Thymus [MA:0000142] 0 0
HOM F #2 Stomach [MA:0000353] 0 0
HOM F #2 Tongue [MA:0000347] 0 0
HOM M #4 Sternum [MA:0001331] 0 0
HOM M #4 Spleen [MA:0000141] 0 0
HOM M #4 Eye [MA:0000261] 0 0
HOM M #1 Spleen [MA:0000141] 0 0
HOM F #2 Seminal vesicle [MA:0000410] Not applicable
HOM M #1 Skeletal muscle [MA:0003148] 0 0
HOM M #4 Skeletal muscle [MA:0003148] 0 0
HOM F #2 Large intestine [MA:0000333] 0 0
HOM F #3 Sciatic nerve [MA:0001172] normal [MPATH:458] 0 0
HOM F #2 Optic II nerve [MA:0001097] 0 0
HOM M #4 Gall bladder [MA:0000356] 0 0
HOM F #2 Testis [MA:0000411] Not applicable
HOM M #4 Thyroid 0 0
HOM M #1 Lung [MA:0000415] 0 0
HOM M #1 Tongue [MA:0000347] 0 0
HOM F #2 Eye [MA:0000261] 1 0 chronic multi-localised Retinal dysplasia.
HOM F #2 Trachea [MA:0000441] 0 0
HOM F #3 Bone marrow [MA:0000134] normal [MPATH:458] 0 0
HOM M #4 Femur [MA:0001359] 0 0
HOM M #4 Ovary [MA:0000384] Not applicable
HOM F #3 Esophagus [MA:0000352] normal [MPATH:458] 0 0
HOM M #1 Prostate gland [MA:0000404] 0 0
HOM F #2 Esophagus [MA:0000352] 0 0
HOM F #2 Thymus [MA:0000142] 0 0
HOM F #2 Uterus [MA:0000389] 0 0
HOM F #3 Heart [MA:0000072] normal [MPATH:458] 0 0
HOM M #1 Skin [MA:0000151] 0 0
HOM M #4 Epididymis [MA:0000397] 0 0
HOM F #3 Uterus [MA:0000389] normal [MPATH:458] 0 0
HOM M #1 Uterus [MA:0000389] Not applicable
HOM M #4 Kidney [MA:0000368] 0 0
HOM M #4 Spinal cord [MA:0000216] 0 0
HOM F #2 Epididymis [MA:0000397] Not applicable
HOM M #1 Heart [MA:0000072] 0 0
HOM M #1 Sternum [MA:0001331] 0 0
HOM F #2 Sciatic nerve [MA:0001172] 0 0
HOM M #4 Seminal vesicle [MA:0000410] 0 0
HOM M #1 Esophagus [MA:0000352] 0 0
HOM F #2 Skeletal muscle [MA:0003148] 0 0
HOM F #2 Kidney [MA:0000368] 0 0
HOM F #3 Trachea [MA:0000441] normal [MPATH:458] 0 0
HOM M #1 Adrenal gland [MA:0000116] 0 0
HOM M #1 Urinary bladder [MA:0000380] 0 0
HOM M #4 Urinary bladder [MA:0000380] 0 0
HOM F #3 Brain [MA:0000168] normal [MPATH:458] 0 0
HOM M #4 Adrenal gland [MA:0000116] 0 0
HOM M #4 Stomach [MA:0000353] 0 0
HOM F #3 Tongue [MA:0000347] normal [MPATH:458] 0 0
HOM M #1 Trachea [MA:0000441] 0 0
HOM M #1 Stomach [MA:0000353] 0 0
HOM M #4 Small intestine [MA:0000337] 0 0
HOM F #3 Lymph node [MA:0000139] normal [MPATH:458] 0 0
HOM M #4 Lung [MA:0000415] 0 0
HOM F #2 Femur [MA:0001359] 0 0
HOM M #1 Brain [MA:0000168] 0 0
HOM F #3 Stomach [MA:0000353] normal [MPATH:458] 0 0
HOM F #3 Lung [MA:0000415] normal [MPATH:458] 0 0
HOM F #3 Eye with optic nerve normal [MPATH:458] 0 0
HOM M #4 Heart [MA:0000072] 0 0
HOM M #4 Brain [MA:0000168] 0 0
HOM F #2 Prostate gland [MA:0000404] Not applicable
HOM M #4 Prostate gland [MA:0000404] 0 0
HOM F #2 Spinal cord [MA:0000216] 0 0
HOM F #3 Epididymis [MA:0000397] Not applicable
HOM F #3 Kidney [MA:0000368] normal [MPATH:458] 0 0
HOM F #3 Sternum [MA:0001331] normal [MPATH:458] 0 0
HOM M #1 Ovary [MA:0000384] Not applicable
HOM M #1 Sciatic nerve [MA:0001172] 0 0
HOM M #4 Esophagus [MA:0000352] 0 0
HOM M #4 Liver [MA:0000358] 0 0
HOM M #1 Seminal vesicle [MA:0000410] 0 0
HOM M #4 Uterus [MA:0000389] Not applicable
HOM F #3 Spleen [MA:0000141] normal [MPATH:458] 0 0
HOM F #3 Prostate Not applicable
HOM F #3 Pancreas [MA:0000120] normal [MPATH:458] 0 0
HOM F #3 Femur [MA:0001359] normal [MPATH:458] 0 0
HOM F #2 Sternum [MA:0001331] 0 0
HOM F #3 Gall bladder [MA:0000356] normal [MPATH:458] 0 0
HOM M #4 Large intestine [MA:0000333] 0 0
HOM M #1 Bone marrow [MA:0000134] 0 0
HOM F #2 Skin [MA:0000151] 0 0
HOM F #3 Thyroid normal [MPATH:458] 0 0
HOM F #2 Heart [MA:0000072] 0 0
HOM M #4 Bone marrow [MA:0000134] 0 0
HOM F #2 Gall bladder [MA:0000356] 0 0
HOM F #2 Mammary gland [MA:0000145] 0 0
HOM F #3 Spinal cord [MA:0000216] normal [MPATH:458] 0 0
HOM M #4 Sciatic nerve [MA:0001172] 0 0
HOM F #2 Thyroid 0 0
HOM F #2 Bone marrow [MA:0000134] 0 0
HOM F #3 Testes Not applicable
HOM F #3 Skin [MA:0000151] normal [MPATH:458] 0 0
HOM F #2 Adrenal gland [MA:0000116] 0 0
HOM M #1 Large intestine [MA:0000333] 0 0
HOM F #3 Skeletal muscle [MA:0003148] normal [MPATH:458] 0 0
HOM F #2 Salivary gland [MA:0000346] 0 0

Associated histopathology images

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