Histopathology data for Pah

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #3 White adipose tissue [MA:0000058] 0 0
HET M #1 Uterus [MA:0000389] Not applicable
HOM F #7 Heart [MA:0000072] 0 0
HOM F #7 Skin [MA:0000151] 0 0
HET F #2 Pancreas [MA:0000120] 0 0
HET M #6 Stomach [MA:0000353] 0 0
HET F #4 White adipose tissue [MA:0000058] 0 0
HET F #2 Tooth [MA:0000348] 0 0
HET M #1 Epididymis [MA:0000397] 0 0
HOM F #7 Brain [MA:0000168] 0 0
HOM M #3 Sternum [MA:0001331] 0 0
HOM M #5 Liver [MA:0000358] 0 0
HET F #4 Prostate gland [MA:0000404] Not applicable
HET F #4 Sternum [MA:0001331] 0 0
HET M #1 Sternum [MA:0001331] 2 0 chronic localized Segmental sternum dislocation
HOM M #5 Heart [MA:0000072] 0 0
HET M #1 Trachea [MA:0000441] 0 0
HOM M #3 Tongue [MA:0000347] 0 0
HET F #2 Small intestine [MA:0000337] 0 0
HOM M #3 Femur [MA:0001359] 0 0
HET M #6 Mammary gland [MA:0000145] Not applicable
HET F #4 Uterus [MA:0000389] 0 0
HET F #4 Thyroid 0 0
HET M #6 Eye [MA:0000261] 0 0
HOM M #3 Epididymis [MA:0000397] 0 0
HOM F #7 Liver [MA:0000358] 0 0
HOM M #3 Uterus [MA:0000389] Not applicable
HOM M #3 Pituitary gland [MA:0000176] 0 0
HET M #1 Femur [MA:0001359] 0 0
HET M #6 Epididymis [MA:0000397] 0 0
HET F #4 Pituitary gland [MA:0000176] 0 0
HOM F #7 Tibia [MA:0001361] 0 0
HET M #6 Uterus [MA:0000389] Not applicable
HOM M #3 Prostate gland [MA:0000404] 0 0
HET M #6 Large intestine [MA:0000333] 0 0
HET M #1 Prostate gland [MA:0000404] 0 0
HET M #6 Trachea [MA:0000441] 0 0
HET F #2 Gall bladder [MA:0000356] 0 0
HET F #4 Brown adipose tissue [MA:0000057] 0 0
HET F #4 Eye [MA:0000261] 0 0
HET F #4 Bone marrow [MA:0000134] 0 0
HOM M #5 Spleen [MA:0000141] 0 0
HET F #4 Tongue [MA:0000347] 0 0
HET M #1 Thyroid 0 0
HET M #6 Tongue [MA:0000347] 0 0
HOM M #3 Spleen [MA:0000141] 0 0
HOM F #7 Spleen [MA:0000141] 0 0
HET M #1 Bone marrow [MA:0000134] 0 0
HET F #2 Esophagus [MA:0000352] 0 0
HOM M #3 Large intestine [MA:0000333] 0 0
HET F #4 Trachea [MA:0000441] 0 0
HET M #6 Testis [MA:0000411] 0 0
HOM M #5 Thyroid 0 0
HOM M #5 Bone marrow [MA:0000134] 0 0
HET F #4 Spleen [MA:0000141] 0 0
HOM M #3 Eye [MA:0000261] 3 1 multifocal to coalescing chronic Retinal dysplasia and cataract
HET F #2 Knee joint [MA:0000471] 0 0
HET M #6 Optic II nerve [MA:0001097] 0 0
HET F #4 Liver [MA:0000358] 0 0
HET F #2 Lymph node [MA:0000139] 0 0
HET M #6 Ovary [MA:0000384] Not applicable
HET F #2 Ear [MA:0000236] 0 0
HOM F #7 Thymus [MA:0000142] 0 0
HET M #6 Seminal vesicle [MA:0000410] 0 0
HOM M #5 Prostate gland [MA:0000404] 0 0
HOM M #5 Tibia [MA:0001361] 0 0
HET F #2 Nasal cavity [MA:0000284] 0 0
HET F #2 Sciatic nerve [MA:0001172] 0 0
HOM M #3 Liver [MA:0000358] 0 0
HOM M #3 Brown adipose tissue [MA:0000057] 0 0
HET M #1 White adipose tissue [MA:0000058] 0 0
HOM M #3 Stomach [MA:0000353] 0 0
HET F #2 Lung [MA:0000415] 0 0
HOM F #7 Prostate gland [MA:0000404] Not applicable
HOM M #5 Thymus [MA:0000142] 0 0
HOM M #5 White adipose tissue [MA:0000058] 0 0
HET M #6 Urinary bladder [MA:0000380] 0 0
HOM M #5 Sternum [MA:0001331] 0 0
HET M #1 Mammary gland [MA:0000145] Not applicable
HOM M #5 Skin [MA:0000151] 0 0
HOM F #7 Tongue [MA:0000347] 0 0
HOM M #3 Brain [MA:0000168] 0 0
HET M #6 Small intestine [MA:0000337] 0 0
HET M #1 Lymph node [MA:0000139] 0 0
HET M #1 Optic II nerve [MA:0001097] 0 0
HOM M #5 Uterus [MA:0000389] Not applicable
HET M #6 Spleen [MA:0000141] 0 0
HOM M #5 Tongue [MA:0000347] 0 0
HET F #4 Skin [MA:0000151] 0 0
HOM M #5 Epididymis [MA:0000397] 0 0
HET F #2 Tibia [MA:0001361] 0 0
HET M #6 Thyroid 0 0
HOM M #3 Seminal vesicle [MA:0000410] 0 0
HET M #6 Bone marrow [MA:0000134] 0 0
HOM M #5 Esophagus [MA:0000352] 0 0
HOM F #7 Tooth [MA:0000348] 0 0
HET M #6 Lung [MA:0000415] 0 0
HOM F #7 Skeletal muscle [MA:0003148] 0 0
HOM F #7 Sternum [MA:0001331] 0 0
HOM M #3 Testis [MA:0000411] 0 0
HOM M #5 Femur [MA:0001359] 0 0
HET F #4 Lymph node [MA:0000139] 0 0
HOM F #7 Pancreas [MA:0000120] 0 0
HET M #1 Spleen [MA:0000141] 0 0
HOM F #7 Brown adipose tissue [MA:0000057] 0 0
HET F #2 Mammary gland [MA:0000145] 0 0
HET F #4 Salivary gland [MA:0000346] 0 0
HET F #4 Adrenal gland [MA:0000116] 0 0
HOM M #5 Skeletal muscle [MA:0003148] 0 0
HET M #6 Ear [MA:0000236] 0 0
HET F #4 Heart [MA:0000072] 0 0
HET F #2 Optic II nerve [MA:0001097] 0 0
HET F #4 Optic II nerve [MA:0001097] 0 0
HOM F #7 Esophagus [MA:0000352] 0 0
HOM M #3 Sciatic nerve [MA:0001172] 0 0
HET M #1 Brown adipose tissue [MA:0000057] 0 0
HET M #1 Pituitary gland [MA:0000176] 0 0
HOM M #3 Mammary gland [MA:0000145] Not applicable
HET M #6 White adipose tissue [MA:0000058] 0 0
HOM M #5 Brown adipose tissue [MA:0000057] 0 0
HOM M #3 Nasal cavity [MA:0000284] 0 0
HOM F #7 Pituitary gland [MA:0000176] 0 0
HET M #1 Tooth [MA:0000348] 0 0
HET F #2 Uterus [MA:0000389] 0 0
HET M #1 Pancreas [MA:0000120] 0 0
HET M #6 Gall bladder [MA:0000356] 0 0
HOM M #3 Bone marrow [MA:0000134] 0 0
HOM M #3 Thyroid 0 0
HOM F #7 Epididymis [MA:0000397] Not applicable
HOM M #3 Tibia [MA:0001361] 0 0
HOM M #3 Gall bladder [MA:0000356] 0 0
HET F #4 Epididymis [MA:0000397] Not applicable
HET F #2 Spleen [MA:0000141] 0 0
HET F #2 Skeletal muscle [MA:0003148] 0 0
HOM F #7 Femur [MA:0001359] 0 0
HOM M #5 Pancreas [MA:0000120] 0 0
HET M #1 Tongue [MA:0000347] 0 0
HET F #4 Femur [MA:0001359] 0 0
HOM M #5 Tooth [MA:0000348] 0 0
HOM M #5 Pituitary gland [MA:0000176] 0 0
HOM M #5 Optic II nerve [MA:0001097] 0 0
HET M #6 Sciatic nerve [MA:0001172] 0 0
HOM M #5 Seminal vesicle [MA:0000410] 0 0
HOM M #5 Testis [MA:0000411] 0 0
HET M #1 Knee joint [MA:0000471] 0 0
HET F #4 Spinal cord [MA:0000216] 0 0
HOM M #5 Ovary [MA:0000384] Not applicable
HOM M #5 Lymph node [MA:0000139] 0 0
HOM M #3 Spinal cord [MA:0000216] 0 0
HET F #2 Prostate gland [MA:0000404] Not applicable
HOM M #5 Urinary bladder [MA:0000380] 0 0
HET F #4 Tooth [MA:0000348] 0 0
HOM F #7 Testis [MA:0000411] Not applicable
HET F #4 Skeletal muscle [MA:0003148] 0 0
HOM M #3 Tooth [MA:0000348] 0 0
HOM M #3 Skeletal muscle [MA:0003148] 0 0
HOM M #3 Kidney [MA:0000368] 0 0
HET M #1 Skeletal muscle [MA:0003148] 0 0
HET M #1 Kidney [MA:0000368] 0 0
HOM F #7 Urinary bladder [MA:0000380] 0 0
HET M #6 Tibia [MA:0001361] 0 0
HOM F #7 Lymph node [MA:0000139] 0 0
HET M #6 Nasal cavity [MA:0000284] 0 0
HET F #4 Knee joint [MA:0000471] 0 0
HET M #1 Thymus [MA:0000142] 0 0
HET M #6 Thymus [MA:0000142] 0 0
HET F #2 Tongue [MA:0000347] 0 0
HOM F #7 Adrenal gland [MA:0000116] 0 0
HET F #4 Esophagus [MA:0000352] 0 0
HET F #4 Gall bladder [MA:0000356] 0 0
HOM M #3 Knee joint [MA:0000471] 0 0
HOM M #3 Pancreas [MA:0000120] 0 0
HET F #4 Pancreas [MA:0000120] 0 0
HOM M #3 Thymus [MA:0000142] 0 0
HET F #2 Sternum [MA:0001331] 0 0
HOM F #7 Salivary gland [MA:0000346] 0 0
HOM M #3 Lung [MA:0000415] 0 0
HET M #1 Sciatic nerve [MA:0001172] 0 0
HET F #2 Pituitary gland [MA:0000176] 0 0
HOM F #7 Optic II nerve [MA:0001097] 0 0
HET M #6 Knee joint [MA:0000471] 0 0
HET F #2 Thyroid 0 0
HET M #6 Brain [MA:0000168] 0 0
HET F #2 Bone marrow [MA:0000134] 0 0
HET M #1 Spinal cord [MA:0000216] 0 0
HET F #2 White adipose tissue [MA:0000058] 0 0
HET M #1 Nasal cavity [MA:0000284] 0 0
HET F #2 Brown adipose tissue [MA:0000057] 0 0
HOM F #7 Seminal vesicle [MA:0000410] Not applicable
HOM F #7 Stomach [MA:0000353] 0 0
HET M #6 Kidney [MA:0000368] 0 0
HET F #2 Epididymis [MA:0000397] Not applicable
HOM F #7 Mammary gland [MA:0000145] 0 0
HET M #6 Skeletal muscle [MA:0003148] 0 0
HOM M #3 Ear [MA:0000236] 0 0
HET M #1 Tibia [MA:0001361] 0 0
HOM F #7 Trachea [MA:0000441] 0 0
HOM M #5 Mammary gland [MA:0000145] Not applicable
HOM F #7 Small intestine [MA:0000337] 0 0
HET F #4 Thymus [MA:0000142] 0 0
HET F #4 Small intestine [MA:0000337] 0 0
HET M #6 Spinal cord [MA:0000216] 0 0
HOM M #5 Trachea [MA:0000441] 0 0
HET F #4 Ovary [MA:0000384] 0 0
HET F #4 Kidney [MA:0000368] 0 0
HOM M #5 Adrenal gland [MA:0000116] 0 0
HOM F #7 Ovary [MA:0000384] 0 0
HOM F #7 Spinal cord [MA:0000216] 0 0
HET F #2 Femur [MA:0001359] 0 0
HOM M #3 Small intestine [MA:0000337] 0 0
HOM M #5 Salivary gland [MA:0000346] 0 0
HET M #6 Liver [MA:0000358] 0 0
HET M #1 Heart [MA:0000072] 0 0
HOM M #3 Urinary bladder [MA:0000380] 0 0
HET M #1 Gall bladder [MA:0000356] 0 0
HET M #1 Esophagus [MA:0000352] 0 0
HOM M #5 Gall bladder [MA:0000356] 0 0
HET M #1 Urinary bladder [MA:0000380] 0 0
HET M #1 Liver [MA:0000358] 0 0
HOM F #7 White adipose tissue [MA:0000058] 0 0
HOM M #3 Heart [MA:0000072] 0 0
HET M #1 Adrenal gland [MA:0000116] 0 0
HOM M #3 Skin [MA:0000151] 0 0
HOM F #7 Kidney [MA:0000368] 0 0
HET M #1 Testis [MA:0000411] 0 0
HOM M #5 Knee joint [MA:0000471] 0 0
HET M #1 Salivary gland [MA:0000346] 0 0
HOM F #7 Uterus [MA:0000389] 0 0
HOM F #7 Knee joint [MA:0000471] 0 0
HET M #1 Skin [MA:0000151] 0 0
HOM M #3 Optic II nerve [MA:0001097] 0 0
HET M #6 Brown adipose tissue [MA:0000057] 0 0
HET F #4 Brain [MA:0000168] 0 0
HET F #2 Brain [MA:0000168] 0 0
HET F #4 Urinary bladder [MA:0000380] 0 0
HET F #2 Heart [MA:0000072] 0 0
HOM M #5 Spinal cord [MA:0000216] 0 0
HET M #6 Salivary gland [MA:0000346] 0 0
HET M #1 Brain [MA:0000168] 0 0
HET M #6 Tooth [MA:0000348] 0 0
HET M #6 Pancreas [MA:0000120] 0 0
HET M #6 Adrenal gland [MA:0000116] 0 0
HOM M #3 Lymph node [MA:0000139] 0 0
HET M #1 Ear [MA:0000236] 0 0
HET M #6 Prostate gland [MA:0000404] 0 0
HOM F #7 Bone marrow [MA:0000134] 0 0
HOM F #7 Eye [MA:0000261] 3 1 multifocal to coalescing chronic Retinal dysplasia and cataract
HET F #2 Stomach [MA:0000353] 0 0
HOM M #3 Ovary [MA:0000384] Not applicable
HET F #4 Stomach [MA:0000353] 0 0
HET F #4 Tibia [MA:0001361] 0 0
HET F #2 Skin [MA:0000151] 0 0
HET F #2 Large intestine [MA:0000333] 0 0
HET M #6 Lymph node [MA:0000139] 0 0
HOM F #7 Gall bladder [MA:0000356] 0 0
HOM F #7 Thyroid 0 0
HET F #4 Testis [MA:0000411] Not applicable
HET M #6 Pituitary gland [MA:0000176] 0 0
HET F #4 Seminal vesicle [MA:0000410] Not applicable
HET F #2 Seminal vesicle [MA:0000410] Not applicable
HET F #4 Mammary gland [MA:0000145] 0 0
HOM M #5 Kidney [MA:0000368] 0 0
HET F #2 Eye [MA:0000261] 0 0
HET F #2 Testis [MA:0000411] Not applicable
HET M #1 Lung [MA:0000415] 0 0
HET F #2 Adrenal gland [MA:0000116] 0 0
HET M #1 Ovary [MA:0000384] Not applicable
HET M #6 Sternum [MA:0001331] 0 0
HET F #2 Thymus [MA:0000142] 0 0
HET M #6 Skin [MA:0000151] 0 0
HET F #2 Salivary gland [MA:0000346] 0 0
HOM F #7 Ear [MA:0000236] 0 0
HOM M #5 Lung [MA:0000415] 0 0
HET F #4 Nasal cavity [MA:0000284] 0 0
HOM M #3 Trachea [MA:0000441] 0 0
HOM M #5 Small intestine [MA:0000337] 0 0
HET F #2 Trachea [MA:0000441] 0 0
HET F #4 Large intestine [MA:0000333] 0 0
HOM F #7 Sciatic nerve [MA:0001172] 0 0
HOM F #7 Large intestine [MA:0000333] 0 0
HOM M #5 Nasal cavity [MA:0000284] 0 0
HET F #4 Sciatic nerve [MA:0001172] 0 0
HOM M #5 Sciatic nerve [MA:0001172] 0 0
HET M #1 Small intestine [MA:0000337] 0 0
HET F #4 Ear [MA:0000236] 0 0
HOM M #3 Adrenal gland [MA:0000116] 0 0
HET M #6 Esophagus [MA:0000352] 0 0
HOM M #3 Salivary gland [MA:0000346] 0 0
HOM M #5 Stomach [MA:0000353] 0 0
HET F #2 Liver [MA:0000358] 0 0
HET M #6 Heart [MA:0000072] 0 0
HET F #2 Urinary bladder [MA:0000380] 0 0
HOM M #3 Esophagus [MA:0000352] 0 0
HET F #2 Kidney [MA:0000368] 0 0
HET M #1 Large intestine [MA:0000333] 0 0
HET M #6 Femur [MA:0001359] 0 0
HOM M #5 Brain [MA:0000168] 0 0
HOM M #5 Eye [MA:0000261] 3 1 multifocal to coalescing chronic Retinal dysplasia and cataract
HOM M #5 Ear [MA:0000236] 0 0
HET F #2 Ovary [MA:0000384] 0 0
HET M #1 Stomach [MA:0000353] 0 0
HET F #2 Spinal cord [MA:0000216] 0 0
HET M #1 Eye [MA:0000261] 0 0
HET F #4 Lung [MA:0000415] 0 0
HET M #1 Seminal vesicle [MA:0000410] 0 0
HOM F #7 Lung [MA:0000415] 0 0
HOM M #5 Large intestine [MA:0000333] 0 0
HOM F #7 Nasal cavity [MA:0000284] 0 0

Associated histopathology images

Pah
homozygote
Eye - MA term MA:0000261
Pahem1(IMPC)Tcp
experimental
Pah
homozygote
Eye - MA term MA:0000261
Pahem1(IMPC)Tcp
experimental
Pah
homozygote
Eye - MA term MA:0000261
Pahem1(IMPC)Tcp
experimental

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