Histopathology data for Bag5

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM F #2 Bone marrow [MA:0000134]
HOM F #2 Esophagus [MA:0000352]
HOM F #3 Femur [MA:0001359]
HOM F #2 Skeletal muscle [MA:0003148]
HOM M #1 Epididymis [MA:0000397]
HOM M #1 Femur [MA:0001359]
HOM F #2 Skin [MA:0000151]
HOM F #2 Sciatic nerve [MA:0001172]
HOM F #2 Eye [MA:0000261] 3 0 Eye, unilateral: Microphthalmia
HOM M #4 Small intestine [MA:0000337]
HOM F #2 Uterus [MA:0000389] 2 0 Uterus: Moderate, stromal edema
HOM M #1 Adrenal gland [MA:0000116]
HOM F #2 Heart [MA:0000072]
HOM F #2 Lung [MA:0000415]
HOM F #3 Small intestine [MA:0000337]
HOM M #4 Liver [MA:0000358]
HOM M #4 Tibia [MA:0001361]
HOM M #1 Large intestine [MA:0000333]
HOM M #1 Kidney [MA:0000368]
HOM F #3 Urinary bladder [MA:0000380]
HOM F #3 Brown adipose tissue [MA:0000057]
HOM F #2 Tongue [MA:0000347]
HOM M #4 Adrenal gland [MA:0000116]
HOM F #2 Nasal cavity [MA:0000284] 1 0 Ventral nasal septum: Focal cyst
HOM F #2 Brain [MA:0000168]
HOM F #2 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild, follicular lymphoid hyperplasia
HOM F #3 Sternum [MA:0001331]
HOM F #3 Ovary [MA:0000384]
HOM F #3 Thymus [MA:0000142]
HOM F #3 Spinal cord [MA:0000216]
HOM F #2 Stomach [MA:0000353]
HOM M #4 Kidney [MA:0000368]
HOM F #3 Mammary gland [MA:0000145]
HOM M #1 Spleen [MA:0000141]
HOM F #2 Trachea [MA:0000441]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM M #4 Spleen [MA:0000141]
HOM M #4 Sternum [MA:0001331]
HOM F #3 Lung [MA:0000415]
HOM F #2 Urinary bladder [MA:0000380]
HOM M #1 Liver [MA:0000358]
HOM F #2 Salivary gland [MA:0000346]
HOM M #4 Stomach [MA:0000353]
HOM M #1 Heart [MA:0000072]
HOM M #4 Knee joint [MA:0000471]
HOM M #1 Pancreas [MA:0000120]
HOM F #2 Ovary [MA:0000384]
HOM M #1 Skin [MA:0000151] 1 0 Haired skin: Mild, segmental lymphoplasmacytic superficial dermatitis with acanthosis and hyperkeratosis
HOM M #4 Tooth [MA:0000348]
HOM F #3 Ear [MA:0000236]
HOM F #3 Large intestine [MA:0000333]
HOM M #1 Lung [MA:0000415]
HOM F #3 Stomach [MA:0000353]
HOM M #1 Stomach [MA:0000353]
HOM F #2 Bone [MA:0001459]
HOM M #1 Skeletal muscle [MA:0003148]
HOM M #4 Gall bladder [MA:0000356]
HOM M #1 Eye [MA:0000261] 1 0 Eye: Mild, multifocal retinal dysplasia
HOM M #4 Thymus [MA:0000142]
HOM M #4 Thyroid
HOM M #1 Spinal cord [MA:0000216]
HOM M #1 Sternum [MA:0001331]
HOM M #1 Knee joint [MA:0000471]
HOM F #3 Heart [MA:0000072]
HOM M #4 Skeletal muscle [MA:0003148]
HOM M #1 Tooth [MA:0000348]
HOM M #4 Spinal cord [MA:0000216]
HOM F #2 Large intestine [MA:0000333]
HOM F #2 Ear [MA:0000236]
HOM M #1 Thymus [MA:0000142]
HOM M #4 Skin [MA:0000151]
HOM M #4 Epididymis [MA:0000397]
HOM F #3 Liver [MA:0000358]
HOM M #4 Femur [MA:0001359]
HOM M #4 Eye [MA:0000261]
HOM M #4 Pancreas [MA:0000120]
HOM M #1 Thyroid
HOM M #1 Gall bladder [MA:0000356]
HOM M #4 Nasal cavity [MA:0000284]
HOM F #3 Lymph node [MA:0000139] 2 0 Lymph node, mesenteric: Moderate, follicular and paracortical lymphoid hyperplasia
HOM M #1 Salivary gland [MA:0000346]
HOM F #3 Sciatic nerve [MA:0001172]
HOM F #2 Brown adipose tissue [MA:0000057]
HOM M #4 Trachea [MA:0000441]
HOM F #2 Liver [MA:0000358]
HOM F #2 Tibia [MA:0001361]
HOM M #1 Trachea [MA:0000441]
HOM F #2 Spinal cord [MA:0000216]
HOM F #3 Nasal cavity [MA:0000284]
HOM F #3 Trachea [MA:0000441]
HOM M #1 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild lymphoid hyperplasia
HOM M #1 Nasal cavity [MA:0000284]
HOM F #2 Mammary gland [MA:0000145]
HOM F #3 Gall bladder [MA:0000356]
HOM F #2 Thymus [MA:0000142]
HOM F #3 Thyroid
HOM M #1 Trigeminal V ganglion [MA:0001080]
HOM F #3 Tooth [MA:0000348]
HOM M #4 Tongue [MA:0000347]
HOM F #3 Skeletal muscle [MA:0003148]
HOM M #4 Brain [MA:0000168]
HOM M #4 Heart [MA:0000072]
HOM F #3 Knee joint [MA:0000471]
HOM M #4 Lung [MA:0000415]
HOM F #3 Skin [MA:0000151]
HOM F #3 Salivary gland [MA:0000346]
HOM F #3 Bone marrow [MA:0000134]
HOM F #3 Eye [MA:0000261]
HOM F #3 Uterus [MA:0000389]
HOM M #4 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild, follicular and paracortical lymphoid hyperplasia
HOM F #2 Small intestine [MA:0000337]
HOM F #2 Adrenal gland [MA:0000116]
HOM F #3 Esophagus [MA:0000352]
HOM F #3 Bone [MA:0001459]
HOM M #1 Ear [MA:0000236]
HOM F #3 Pancreas [MA:0000120]
HOM F #2 Kidney [MA:0000368]
HOM M #1 Tongue [MA:0000347]
HOM F #2 Sternum [MA:0001331]
HOM M #1 Tibia [MA:0001361]
HOM M #4 Testis [MA:0000411] 2 1 Testes: Moderate, multifocal late pachytene spermatocyte mitoses and multifocal binucleation
HOM F #2 Tooth [MA:0000348]
HOM F #2 Trigeminal V ganglion [MA:0001080]
HOM F #2 Knee joint [MA:0000471]
HOM M #1 Small intestine [MA:0000337]
HOM F #3 Tongue [MA:0000347]
HOM M #1 Brain [MA:0000168]
HOM F #3 Brain [MA:0000168]
HOM M #4 Urinary bladder [MA:0000380]
HOM M #1 Brown adipose tissue [MA:0000057]
HOM F #3 Trigeminal V ganglion [MA:0001080]
HOM F #2 Spleen [MA:0000141]
HOM M #4 Prostate gland [MA:0000404]
HOM M #4 Salivary gland [MA:0000346]
HOM M #4 Large intestine [MA:0000333]
HOM F #2 Gall bladder [MA:0000356]
HOM F #2 Femur [MA:0001359]
HOM M #4 Ear [MA:0000236]
HOM F #3 Adrenal gland [MA:0000116]
HOM F #3 Kidney [MA:0000368]
HOM M #1 Sciatic nerve [MA:0001172]
HOM M #1 Bone marrow [MA:0000134]
HOM M #1 Esophagus [MA:0000352]
HOM F #2 Pancreas [MA:0000120]
HOM M #1 Urinary bladder [MA:0000380]
HOM M #1 Seminal vesicle [MA:0000410]
HOM M #4 Seminal vesicle [MA:0000410]
HOM M #4 Brown adipose tissue [MA:0000057]
HOM M #4 Bone [MA:0001459]
HOM F #3 Spleen [MA:0000141]
HOM M #1 Bone [MA:0001459]
HOM M #4 Esophagus [MA:0000352]
HOM M #1 Prostate gland [MA:0000404]
HOM M #4 Sciatic nerve [MA:0001172]
HOM F #2 Thyroid
HOM F #3 Tibia [MA:0001361]
HOM M #4 Bone marrow [MA:0000134]
HOM M #1 Testis [MA:0000411] 2 1 Testis: Moderate, multifocal late pachytene spermatocyte mitoses and multifocal binucleation

Associated histopathology images

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