IMPC Release Notes

IMPC
  • Release: 7.0
  • Published: 26 March 2018
Statistical Package
  • PhenStat
  • Version: 2.14.0
Genome Assembly
  • Mus musculus
  • Version: GRCm38
Summary
  • Number of phenotyped genes: 4,820
  • Number of phenotyped mutant lines: 5,186
  • Number of phenotype calls: 60,670

Data access

Highlights

Data release 7.0

Data release 7.0 includes: This represents a major data release. Changes include
  • More than 7,000 new phenotypes
  • More than 500 new genes
  • Statistical analysis of EYE parameters no longer include categories 'no data left eye' and 'no data right eye'
  • Viability data correction and new viability dataCorrected metadata group calculation for several parameters
  • Corrected extraneous zygosity phenotype association when data was available for multiple zygosities, but insufficient numbers were available for one of the datasets to perform statistical analysis
  • Inclusion of derived parameter calculation for Heart weight normalised against body weight (IMPC_HWT_012_001)

Data Reports

Lines and Specimens

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
JAX 1,028 6,994 29,299
TCP 471 6,345 20,873
HMGU 261 2,664 4,773
KMPC 30 549 628
MARC 235 1,879 3,776
MRC Harwell 502 5,179 12,953
RBRC 79 1,785 1,621
ICS 193 2,008 3,091
WTSI 1,088 3,504 17,552
BCM 467 1,607 13,943
UC Davis 832 2,891 19,715

Experimental Data and Quality Checks

Data Type QC passed QC failed issues
categorical 12,225,255 3,221 * 16,529 *
unidimensional 9,099,910 28,370 * 203,522 *
time series 12,778,993 2,393 * 11 *
text 154,731 11,369 * 39,733 *
image record 358,288 0 0

* Excluded from statistical analysis.

Allele Types

Mutation Name Mutant Lines
Targeted Mutation a 793
Targeted Mutation 1 1100
Targeted Mutation b 2320
Targeted Mutation 2 5
Targeted Mutation c 2
Targeted Mutation d 3
Targeted Mutation e 62

Mouse knockout programs: KOMP,IMPC,EUCOMM,NCOM,mirKO,IST12471H5

Distribution of Phenotype Annotations

Status

Overall

By Center

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More charts and status information are available from iMits.

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Phenotype Associations Overview

We provide a 'phenome' overview of statistically significant calls. By following the links below, you'll access the details of the phenotype calls for each center.

Phenotyping Center Significant MP Calls Pipeline
JAXBrowseIMPC_001
JAXBrowseJAX_001
TCPBrowseTCP_001
HMGUBrowseIMPC_001
HMGUBrowseHMGU_001
KMPCBrowseIMPC_001
MARCBrowseIMPC_001
MRC HarwellBrowseHRWL_001
RBRCBrowseIMPC_001
ICSBrowseICS_001
WTSIBrowseMGP_001
BCMBrowseIMPC_001
BCMBrowseBCM_001
UC DavisBrowseUCD_001

Trends




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Previous Releases