IMPC Release Notes

IMPC
  • Release: 7.0
  • Published: 26 March 2018
Statistical Package
  • PhenStat
  • Version: 2.14.0
Genome Assembly
  • Mus musculus
  • Version: GRCm38
Summary
  • Number of phenotyped genes: 4,820
  • Number of phenotyped mutant lines: 5,186
  • Number of phenotype calls: 60,670

Data access

Highlights

Data release 7.0

Data release 7.0 represents a major data release. Changes include: This represents a major data release. Changes include
  • More than 7,000 new phenotypes
  • More than 500 new genes
  • Statistical analysis of EYE parameters no longer include categories 'no data left eye' and 'no data right eye'
  • Viability data correction and new viability dataCorrected metadata group calculation for several parameters
  • Corrected extraneous zygosity phenotype association when data was available for multiple zygosities, but insufficient numbers were available for one of the datasets to perform statistical analysis
  • Inclusion of derived parameter calculation for Heart weight normalised against body weight (IMPC_HWT_012_001)

Data Reports

Lines and Specimens

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
JAX 1,028 6,994 29,299
TCP 471 6,345 20,873
HMGU 261 2,664 4,773
KMPC 30 549 628
MARC 235 1,879 3,776
MRC Harwell 502 5,179 12,953
RBRC 79 1,785 1,621
ICS 193 2,008 3,091
WTSI 1,088 3,504 17,552
BCM 467 1,607 13,943
UC Davis 832 2,891 19,715

Experimental Data and Quality Checks

Data Type QC passed QC failed issues
categorical 12,225,255 3,221 * 16,529 *
unidimensional 9,099,910 28,370 * 203,522 *
time series 12,778,993 2,393 * 11 *
text 154,731 11,369 * 39,733 *
image record 358,288 0 0

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Status

Overall

By Center

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More charts and status information are available from iMits.

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Trends




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Previous Releases