IMPC
- Release: 9.2
- Published: 23 January 2019
Statistical Package
- PhenStat
- Version: 2.14.1
Genome Assembly
- Mus musculus
- Version: GRCm38
Summary
- Number of phenotyped genes: 5,614
- Number of phenotyped mutant lines: 6,006
- Number of phenotype calls: 58,107
Data access
- Ftp site: ftp://ftp.ebi.ac.uk/pub/databases/impc/release-9.2
- RESTful interfaces: APIs
Highlights
Data release 9.2
- Phenotypes for Fear Conditioning procedure (IMPC_FEA_001) derived parameters
- Corrected histopathology call generation logic which adds more than 300 histopath calls
- Fixes a datapoint loading duplication in the 3I procedures
- Corrected data for some Acoustic Startle data
Data Reports
Lines and Specimens
Phenotyping Center | Mutant Lines | Baseline Mice | Mutant Mice |
---|---|---|---|
JAX | 1,155 | 7,968 | 33,496 |
TCP | 529 | 6,838 | 23,932 |
HMGU | 308 | 3,104 | 5,644 |
KMPC | 39 | 786 | 1,004 |
MARC | 232 | 1,877 | 3,776 |
MRC Harwell | 563 | 5,788 | 14,897 |
RBRC | 93 | 1,981 | 1,817 |
ICS | 214 | 2,243 | 3,430 |
WTSI | 1,328 | 4,563 | 21,297 |
BCM | 521 | 4,225 | 15,956 |
UC Davis | 1,024 | 3,875 | 23,467 |
Experimental Data and Quality Checks
Data Type | QC passed | QC failed | issues |
---|---|---|---|
categorical | 13,312,831 | 3,734 * | 17,736 * |
unidimensional | 10,094,468 | 36,902 * | 283,622 * |
time series | 12,236,110 | 2,570 * | 11 * |
text | 180,098 | 11,124 * | 45,653 * |
image record | 396,400 | 0 | 0 |
* Excluded from statistical analysis.
Distribution of Phenotype Annotations
Status
Overall
By Center
More charts and status information are available from iMits.
Previous Releases
- Release 9.1 notes
- Release 8.0 notes
- Release 7.0 notes
- Release 6.1 notes
- Release 6.0 notes
- Release 5.0 notes
- Release 4.3 notes
- Release 4.2 notes
- Release 4.0 notes
- Release 3.4 notes
- Release 3.3 notes
- Release 3.2 notes
- Release 3.1 notes
- Release 3.0 notes
- Release 2.0 notes
- Release 1.1 notes
- Release 1.0 notes