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Phenotype: abnormal pharyngeal arch morphology

Definition
any structural anomaly of the transient structures of the embryo that develop into regions of the head, neck and ears
Synonyms
abnormal pharyngeal arches,  abnormal branchial arches,  abnormal branchial arch morphology
Significant gene associations The way we measure Phenotype stats
0%
of tested genes
0
significant genes
0
tested genes

IMPC Gene variants with abnormal pharyngeal arch morphology

Total number of significant genotype-phenotype associations: 59

Gene / Allele Zygosity Sex Life Stage Phenotype Parameter Phenotyping
Center		 P Value
Alg10b
Alg10btm1.1(KOMP)Vlcg 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Ankmy2
Ankmy2em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Arpc1a
Arpc1aem1(IMPC)J 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 JAX
IMPC		 0.00
Atp1b1
Atp1b1em1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Dsp
Dspem1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Eng
Engem1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Faf2
Faf2em1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Glmn
Glmnem1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Got2
Got2em1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Ift172
Ift172tm2b(EUCOMM)Hmgu 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Ift43
Ift43tm1b(EUCOMM)Hmgu 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Ipo9
Ipo9em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Isyna1
Isyna1em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Krit1
Krit1tm1.1(KOMP)Vlcg 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Mdh1
Mdh1em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Nog
Nogem1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Nr6a1
Nr6a1tm1b(EUCOMM)Wtsi 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Nsmce2
Nsmce2em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Opa1
Opa1em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Pcgf1
Pcgf1tm1.1(KOMP)Vlcg 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 JAX
IMPC		 0.00
Pcnp
Pcnpem1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Pdhb
Pdhbem1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Pigq
Pigqtm2b(EUCOMM)Wtsi 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Psmg1
Psmg1tm1b(KOMP)Wtsi 		HET E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Rad9a
Rad9atm1.1(KOMP)Wtsi 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Sfmbt2
Sfmbt2em1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Slc30a9
Slc30a9em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Tbx20
Tbx20em1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Tmem70
Tmem70em2(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Ube2f
Ube2fem1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Uggt1
Uggt1em1(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Uqcc3
Uqcc3em1(IMPC)Bay 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Vcan
Vcanem2(IMPC)Mbp 		HOM E9.5 abnormal pharyngeal arch morphology Branchial arch morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00

Download data as:   TSV   XLS

 The way we measure

Procedure
Gross Morphology Embryo E9.5

 Phenotype associations stats

4.56% of tested genes with null mutations on a B6N genetic background have a phenotype association to abnormal pharyngeal arch morphology (33/724)

4.32% females (30/695) 4.19% males (29/692)

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