Histopathology data for Otol1

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #4 Nasal cavity [MA:0000284]
HOM F #1 Stomach [MA:0000353]
HOM M #4 Bone marrow [MA:0000134]
HOM M #4 Eye [MA:0000261]
HOM M #4 Sciatic nerve [MA:0001172]
HOM M #4 Skeletal muscle [MA:0003148]
HOM M #3 Pancreas [MA:0000120]
HOM F #2 Pancreas [MA:0000120]
HOM F #1 Ear [MA:0000236] 2 1 otoconial dysgenesis
HOM M #4 Lymph node [MA:0000139]
HOM F #2 Brown adipose tissue [MA:0000057]
HOM M #3 Brown adipose tissue [MA:0000057]
HOM F #1 Lung [MA:0000415]
HOM F #2 Thymus [MA:0000142]
HOM M #4 Gall bladder [MA:0000356]
HOM M #3 Thymus [MA:0000142]
HOM F #1 Large intestine [MA:0000333]
HOM F #2 Mammary gland [MA:0000145]
HOM F #1 Brain [MA:0000168]
HOM F #2 Liver [MA:0000358]
HOM F #2 Tibia [MA:0001361]
HOM M #3 Tibia [MA:0001361]
HOM M #3 Liver [MA:0000358]
HOM M #4 Thyroid
HOM M #4 Trachea [MA:0000441]
HOM F #1 Skin [MA:0000151]
HOM F #1 Skeletal muscle [MA:0003148]
HOM F #2 Trigeminal V ganglion [MA:0001080]
HOM F #1 Ovary [MA:0000384]
HOM M #4 Brain [MA:0000168]
HOM F #1 Uterus [MA:0000389]
HOM M #4 Prostate gland [MA:0000404]
HOM M #3 Testis [MA:0000411]
HOM F #1 Urinary bladder [MA:0000380]
HOM M #4 Skin [MA:0000151]
HOM M #3 Tooth [MA:0000348]
HOM M #4 Tooth [MA:0000348]
HOM F #1 Sternum [MA:0001331]
HOM M #3 Knee joint [MA:0000471]
HOM F #1 Bone marrow [MA:0000134]
HOM F #1 Femur [MA:0001359]
HOM M #3 Salivary gland [MA:0000346]
HOM M #4 Esophagus [MA:0000352]
HOM M #4 Bone [MA:0001459]
HOM M #3 Small intestine [MA:0000337]
HOM F #1 Esophagus [MA:0000352]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM F #1 Trachea [MA:0000441]
HOM M #4 Sternum [MA:0001331]
HOM M #4 Testis [MA:0000411]
HOM M #4 Spleen [MA:0000141]
HOM F #1 Nasal cavity [MA:0000284]
HOM F #1 Sciatic nerve [MA:0001172]
HOM M #4 Adrenal gland [MA:0000116]
HOM M #3 Femur [MA:0001359]
HOM M #4 Salivary gland [MA:0000346]
HOM F #2 Eye [MA:0000261]
HOM M #3 Epididymis [MA:0000397]
HOM F #2 Femur [MA:0001359]
HOM M #3 Sternum [MA:0001331]
HOM M #3 Kidney [MA:0000368]
HOM F #2 Sternum [MA:0001331]
HOM M #3 Spinal cord [MA:0000216]
HOM F #2 Spinal cord [MA:0000216]
HOM M #3 Trigeminal V ganglion [MA:0001080]
HOM M #3 Eye [MA:0000261]
HOM F #2 Nasal cavity [MA:0000284]
HOM M #3 Spleen [MA:0000141]
HOM M #4 Tongue [MA:0000347]
HOM F #2 Tooth [MA:0000348]
HOM F #2 Knee joint [MA:0000471]
HOM F #2 Stomach [MA:0000353]
HOM M #4 Kidney [MA:0000368]
HOM F #2 Trachea [MA:0000441]
HOM M #3 Thyroid
HOM M #4 Tibia [MA:0001361]
HOM M #3 Gall bladder [MA:0000356]
HOM F #1 Heart [MA:0000072]
HOM F #1 Liver [MA:0000358]
HOM M #3 Ear [MA:0000236] 3 1 otoconial dysgenesis
HOM F #2 Ear [MA:0000236]
HOM F #1 Pancreas [MA:0000120]
HOM M #3 Tongue [MA:0000347]
HOM F #2 Tongue [MA:0000347]
HOM M #3 Skin [MA:0000151]
HOM F #2 Lung [MA:0000415]
HOM M #3 Lung [MA:0000415]
HOM M #3 Prostate gland [MA:0000404]
HOM F #2 Uterus [MA:0000389]
HOM M #4 Brown adipose tissue [MA:0000057]
HOM M #3 Skeletal muscle [MA:0003148]
HOM F #2 Skeletal muscle [MA:0003148]
HOM F #2 Skin [MA:0000151]
HOM M #4 Small intestine [MA:0000337]
HOM F #1 Trigeminal V ganglion [MA:0001080]
HOM F #2 Bone marrow [MA:0000134]
HOM M #3 Bone marrow [MA:0000134]
HOM F #2 Esophagus [MA:0000352]
HOM M #3 Esophagus [MA:0000352]
HOM F #2 Heart [MA:0000072]
HOM M #3 Heart [MA:0000072]
HOM F #2 Spleen [MA:0000141]
HOM F #1 Small intestine [MA:0000337]
HOM F #1 Bone [MA:0001459]
HOM F #1 Thymus [MA:0000142]
HOM F #1 Knee joint [MA:0000471]
HOM F #2 Sciatic nerve [MA:0001172]
HOM F #1 Salivary gland [MA:0000346]
HOM F #1 Brown adipose tissue [MA:0000057]
HOM M #3 Stomach [MA:0000353]
HOM M #3 Nasal cavity [MA:0000284]
HOM M #3 Lymph node [MA:0000139]
HOM F #1 Tooth [MA:0000348]
HOM M #4 Urinary bladder [MA:0000380]
HOM M #3 Urinary bladder [MA:0000380]
HOM M #4 Pancreas [MA:0000120]
HOM M #3 Adrenal gland [MA:0000116]
HOM M #4 Spinal cord [MA:0000216]
HOM M #4 Epididymis [MA:0000397]
HOM M #4 Femur [MA:0001359]
HOM M #3 Trachea [MA:0000441]
HOM F #2 Gall bladder [MA:0000356]
HOM F #2 Thyroid
HOM F #1 Mammary gland [MA:0000145]
HOM F #2 Large intestine [MA:0000333]
HOM M #4 Thymus [MA:0000142]
HOM M #3 Brain [MA:0000168]
HOM M #4 Seminal vesicle [MA:0000410]
HOM F #1 Spinal cord [MA:0000216]
HOM F #1 Lymph node [MA:0000139]
HOM M #4 Large intestine [MA:0000333]
HOM F #1 Eye [MA:0000261]
HOM M #4 Knee joint [MA:0000471]
HOM M #3 Seminal vesicle [MA:0000410]
HOM F #2 Bone [MA:0001459] 2 0 unilateral coccygeal vertebra developmental vertebra
HOM M #4 Lung [MA:0000415]
HOM M #3 Bone [MA:0001459]
HOM F #2 Ovary [MA:0000384]
HOM M #4 Stomach [MA:0000353]
HOM F #1 Thyroid
HOM F #1 Gall bladder [MA:0000356]
HOM F #2 Kidney [MA:0000368]
HOM M #4 Ear [MA:0000236] 3 1 Otoconial dysgenesis
HOM F #1 Adrenal gland [MA:0000116]
HOM M #3 Sciatic nerve [MA:0001172]
HOM M #4 Heart [MA:0000072]
HOM F #2 Lymph node [MA:0000139]
HOM F #2 Urinary bladder [MA:0000380]
HOM F #1 Tongue [MA:0000347]
HOM F #2 Adrenal gland [MA:0000116]
HOM F #1 Spleen [MA:0000141]
HOM F #2 Salivary gland [MA:0000346]
HOM F #1 Kidney [MA:0000368]
HOM M #4 Liver [MA:0000358]
HOM F #1 Tibia [MA:0001361]
HOM M #3 Large intestine [MA:0000333]
HOM F #2 Small intestine [MA:0000337]
HOM F #2 Brain [MA:0000168]

Associated histopathology images

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