Histopathology data for Or1e1c

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM F #1 Spleen [MA:0000141] 2 0 Spleen: Extramedullary hematopoiesis, moderate increase
HOM M #7 Brain [MA:0000168] 1 0 mild hydrocephalus
HOM M #6 Epididymis [MA:0000397]
HOM F #1 Kidney [MA:0000368] 0 0
HOM F #3 Liver [MA:0000358] 0 0
HOM M #2 Testis [MA:0000411] 0
HOM F #8 Small intestine [MA:0000337]
HOM M #6 Urinary bladder [MA:0000380]
HOM F #3 Esophagus [MA:0000352] 0 0
HOM F #1 Trachea [MA:0000441] 0 0
HOM F #8 Tooth [MA:0000348]
HOM F #1 Adrenal gland [MA:0000116] 0 0
HOM M #2 Gall bladder [MA:0000356] 0 0
HOM M #7 Skin [MA:0000151]
HOM M #6 Pancreas [MA:0000120]
HOM F #3 Trigeminal V ganglion [MA:0001080] 0 0
HOM F #8 Brown adipose tissue [MA:0000057]
HOM M #6 Nasal cavity [MA:0000284]
HOM F #3 Heart [MA:0000072] 0 0
HOM F #3 Brain [MA:0000168] 0 0
HOM F #3 Skin [MA:0000151] 0 0
HOM F #8 Bone [MA:0001459]
HOM M #6 Salivary gland [MA:0000346]
HOM M #7 Liver [MA:0000358]
HOM M #4 Optic II nerve [MA:0001097] 0 0
HOM M #4 Small intestine [MA:0000337] 0 0
HOM M #2 Large intestine [MA:0000333] 0 0
HOM M #4 Skeletal muscle [MA:0003148] 0 0
HOM M #6 Femur [MA:0001359]
HOM F #3 Uterus [MA:0000389] 2 0 Uterus: Moderate, bilateral, cystic endometrial hyperplasia with mild, stromal edema
HOM F #1 Eye [MA:0000261] 0 0
HOM F #1 Skeletal muscle [MA:0003148] 0 0
HOM F #5 Heart [MA:0000072]
HOM M #6 Large intestine [MA:0000333]
HOM F #3 Mammary gland [MA:0000145] 0
HOM M #7 Tibia [MA:0001361]
HOM F #5 Trigeminal V ganglion [MA:0001080]
HOM F #5 Esophagus [MA:0000352]
HOM M #7 Ear [MA:0000236]
HOM F #5 Skin [MA:0000151]
HOM M #4 Urinary bladder [MA:0000380] 0 0
HOM M #7 Stomach [MA:0000353]
HOM F #3 Eye [MA:0000261] 0 0
HOM M #4 Spleen [MA:0000141] 2 0 Spleen: Extramedullary hematopoiesis, moderate increase
HOM F #5 Uterus [MA:0000389]
HOM M #6 Testis [MA:0000411]
HOM F #8 Bone marrow [MA:0000134]
HOM F #5 Brain [MA:0000168]
HOM M #6 Gall bladder [MA:0000356]
HOM F #5 Thyroid
HOM M #4 Epididymis [MA:0000397] 1 0 Epididymis: Mild, multifocal, interstitial lymphocytic cellular infiltrates and moderate, multifocal, epithelial vacuolation
HOM F #5 Liver [MA:0000358]
HOM F #1 Trigeminal V ganglion [MA:0001080] 0 0
HOM F #1 Heart [MA:0000072] 0 0
HOM F #8 Nasal cavity [MA:0000284]
HOM F #8 Adrenal gland [MA:0000116]
HOM F #3 Stomach [MA:0000353] 0 0
HOM F #1 Thyroid 0 0
HOM M #6 Tooth [MA:0000348]
HOM F #5 Kidney [MA:0000368]
HOM F #5 Trachea [MA:0000441]
HOM M #2 Epididymis [MA:0000397] 1 0 Epididymis: Mild, multifocal, epithelial vacuolation
HOM M #6 Brown adipose tissue [MA:0000057]
HOM F #1 Pancreas [MA:0000120] 0 0
HOM F #3 Spleen [MA:0000141] 1 0 Spleen: Extramedullary hematopoiesis, mild increase
HOM F #5 Knee joint [MA:0000471]
HOM F #8 Lung [MA:0000415]
HOM M #7 Tongue [MA:0000347]
HOM F #5 Lymph node [MA:0000139]
HOM M #4 Large intestine [MA:0000333] 0 0
HOM F #1 Salivary gland [MA:0000346] 1 0 Salivary gland: Mild, multifocal, lymphocytic cellular infiltrate
HOM F #5 Ovary [MA:0000384]
HOM F #5 Thymus [MA:0000142]
HOM F #1 Esophagus [MA:0000352] 0 0
HOM F #3 Kidney [MA:0000368] 0 0
HOM M #2 Small intestine [MA:0000337] 1 0 Ileum: Mild, multifocal, crypt necrosis (crypt abscess)
HOM M #7 Gall bladder [MA:0000356]
HOM M #7 Thyroid
HOM F #8 Gall bladder [MA:0000356]
HOM M #7 Testis [MA:0000411]
HOM M #6 Skeletal muscle [MA:0003148]
HOM M #4 Lung [MA:0000415] 0 0
HOM F #8 Eye [MA:0000261]
HOM M #7 Eye [MA:0000261]
HOM F #5 Bone [MA:0001459]
HOM F #5 Mammary gland [MA:0000145]
HOM M #7 Adrenal gland [MA:0000116]
HOM F #1 Small intestine [MA:0000337] 0 0
HOM F #3 Ovary [MA:0000384] 0
HOM F #5 Spleen [MA:0000141]
HOM F #5 Ear [MA:0000236]
HOM F #8 Spinal cord [MA:0000216]
HOM M #2 Salivary gland [MA:0000346] 1 0 Salivary gland: Mild, multifocal, lymphocytic cellular infiltrate
HOM F #5 Adrenal gland [MA:0000116]
HOM F #8 Sciatic nerve [MA:0001172]
HOM M #6 Adrenal gland [MA:0000116]
HOM F #1 Optic II nerve [MA:0001097] 0 0
HOM F #8 Kidney [MA:0000368]
HOM M #7 Lymph node [MA:0000139]
HOM M #7 Heart [MA:0000072]
HOM F #5 Sciatic nerve [MA:0001172]
HOM M #7 Skeletal muscle [MA:0003148]
HOM M #6 Tongue [MA:0000347]
HOM F #5 Gall bladder [MA:0000356]
HOM M #4 Pancreas [MA:0000120] 1 0 Pancreas and peri-pancreatic adipose tissue: Mild, multifocal, mononuclear cellular infiltrate
HOM M #2 Prostate gland [MA:0000404] 0
HOM F #1 Mammary gland [MA:0000145] 0
HOM M #4 Kidney [MA:0000368] 0 0
HOM M #2 Thymus [MA:0000142] 3 0 Thymus: Moderate to severe, cortical atrophy
HOM M #7 Esophagus [MA:0000352]
HOM M #7 Trigeminal V ganglion [MA:0001080]
HOM F #3 Thymus [MA:0000142] 1 0 Thymus: Mild, cortical atrophy
HOM F #1 Uterus [MA:0000389] 2 0 Uterine horn, unilateral: Moderate, cystic endometrial hyperplasia
HOM M #6 Brain [MA:0000168]
HOM M #6 Thyroid
HOM F #3 Lung [MA:0000415] 1 0 Lung: Mild, multifocal, lymphocytic cellular infiltrate
HOM F #8 Thymus [MA:0000142]
HOM F #8 Pancreas [MA:0000120]
HOM F #1 Large intestine [MA:0000333] 0 0
HOM F #8 Ovary [MA:0000384]
HOM M #6 Skin [MA:0000151]
HOM M #4 Prostate gland [MA:0000404] 0
HOM M #2 Pancreas [MA:0000120] 0 0
HOM F #8 Salivary gland [MA:0000346]
HOM M #2 Kidney [MA:0000368] 0 0
HOM F #5 Brown adipose tissue [MA:0000057]
HOM M #6 Bone [MA:0001459]
HOM F #5 Eye [MA:0000261]
HOM M #7 Bone [MA:0001459]
HOM M #2 Seminal vesicle [MA:0000410] 3 0 Seminal vesicle, bilateral: Severe, dilation with epithelial attenuation
HOM F #8 Mammary gland [MA:0000145]
HOM M #6 Lymph node [MA:0000139]
HOM M #2 Lung [MA:0000415] 1 0 Lung: Mild, multifocal, peribronchiolar lymphocytic cellular infiltrate
HOM M #7 Knee joint [MA:0000471]
HOM F #8 Spleen [MA:0000141]
HOM M #7 Trachea [MA:0000441]
HOM F #8 Large intestine [MA:0000333]
HOM M #6 Trachea [MA:0000441]
HOM F #8 Ear [MA:0000236]
HOM M #6 Knee joint [MA:0000471]
HOM F #3 Pancreas [MA:0000120] 1 0 Pancreas: Mild, multifocal, mononuclear cellular infiltrates Pancreas: Mild, focal, interstitial fibrosis
HOM M #6 Esophagus [MA:0000352]
HOM F #8 Brain [MA:0000168]
HOM F #8 Uterus [MA:0000389]
HOM F #5 Spinal cord [MA:0000216]
HOM M #7 Small intestine [MA:0000337]
HOM M #6 Liver [MA:0000358]
HOM M #7 Tooth [MA:0000348]
HOM M #2 Thyroid 0 0
HOM F #5 Urinary bladder [MA:0000380]
HOM M #4 Seminal vesicle [MA:0000410] 0
HOM F #8 Skin [MA:0000151]
HOM F #1 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild, paracortical lymphoid hyperplasia
HOM F #3 Salivary gland [MA:0000346] 2 0 Salivary gland: Moderate, multifocal, mononuclear cellular infiltrate
HOM F #3 Optic II nerve [MA:0001097] 0 0
HOM M #4 Skin [MA:0000151] 0 0
HOM F #1 Lung [MA:0000415] 0 0
HOM F #5 Nasal cavity [MA:0000284]
HOM M #7 Salivary gland [MA:0000346]
HOM F #5 Large intestine [MA:0000333]
HOM M #2 Spleen [MA:0000141] 1 0 Spleen: Extramedullary hematopoiesis, mild increase (erythroid dominant)
HOM M #4 Thymus [MA:0000142] 0 0
HOM M #7 Urinary bladder [MA:0000380]
HOM F #1 Thymus [MA:0000142] 2 0 Thymus: Moderate, cortical atrophy
HOM M #7 Femur [MA:0001359]
HOM M #4 Brain [MA:0000168] 0 0
HOM M #6 Trigeminal V ganglion [MA:0001080]
HOM F #5 Salivary gland [MA:0000346]
HOM F #1 Gall bladder [MA:0000356] 0 0
HOM M #6 Heart [MA:0000072]
HOM F #1 Ovary [MA:0000384] 0
HOM F #3 Small intestine [MA:0000337] 0 0
HOM M #4 Liver [MA:0000358] 0 0
HOM M #2 Adrenal gland [MA:0000116] 0 0
HOM F #8 Knee joint [MA:0000471]
HOM F #5 Femur [MA:0001359]
HOM F #3 Urinary bladder [MA:0000380] 0 0
HOM F #8 Stomach [MA:0000353]
HOM M #6 Tibia [MA:0001361]
HOM F #8 Trigeminal V ganglion [MA:0001080]
HOM M #7 Epididymis [MA:0000397]
HOM F #8 Heart [MA:0000072]
HOM F #8 Esophagus [MA:0000352]
HOM F #3 Large intestine [MA:0000333] 0 0
HOM F #8 Sternum [MA:0001331]
HOM M #7 Bone marrow [MA:0000134]
HOM M #4 Stomach [MA:0000353] 2 0 Stomach, glandular: Moderate, regionally extensive, neutrophilic gastritis
HOM M #6 Eye [MA:0000261]
HOM F #5 Small intestine [MA:0000337]
HOM M #7 Brown adipose tissue [MA:0000057]
HOM F #5 Pancreas [MA:0000120]
HOM M #2 Eye [MA:0000261] 0 0
HOM F #5 Tongue [MA:0000347]
HOM M #6 Sciatic nerve [MA:0001172]
HOM M #6 Stomach [MA:0000353]
HOM M #7 Sciatic nerve [MA:0001172]
HOM F #5 Lung [MA:0000415]
HOM M #2 Stomach [MA:0000353] 0 0
HOM F #8 Tibia [MA:0001361]
HOM M #4 Eye [MA:0000261] 0 0
HOM M #2 Skin [MA:0000151] 0 0
HOM F #8 Tongue [MA:0000347]
HOM F #3 Adrenal gland [MA:0000116] 0 0
HOM F #5 Skeletal muscle [MA:0003148]
HOM M #2 Optic II nerve [MA:0001097] 0 0
HOM F #1 Urinary bladder [MA:0000380] 0 0
HOM M #7 Lung [MA:0000415]
HOM M #6 Sternum [MA:0001331]
HOM M #6 Bone marrow [MA:0000134]
HOM F #1 Liver [MA:0000358] 0 0
HOM F #8 Thyroid
HOM F #3 Trachea [MA:0000441] 0 0
HOM M #2 Brain [MA:0000168] 0 0
HOM M #4 Gall bladder [MA:0000356] 0 0
HOM M #6 Ear [MA:0000236]
HOM M #2 Liver [MA:0000358] 0 0
HOM F #1 Brain [MA:0000168] 0 0
HOM F #1 Skin [MA:0000151] 0 0
HOM M #7 Spleen [MA:0000141]
HOM M #7 Nasal cavity [MA:0000284]
HOM F #1 Stomach [MA:0000353] 0 0
HOM M #4 Testis [MA:0000411] 3 0 Testis, unilateral: Marked, diffuse, tubular necrosis with luminal mineralization
HOM F #3 Gall bladder [MA:0000356] 0 0
HOM F #3 Skeletal muscle [MA:0003148] 0 0
HOM F #5 Tibia [MA:0001361]
HOM M #7 Sternum [MA:0001331]
HOM M #6 Spleen [MA:0000141]
HOM F #8 Trachea [MA:0000441]
HOM F #5 Sternum [MA:0001331]
HOM M #2 Esophagus [MA:0000352] 0 0
HOM M #2 Heart [MA:0000072] 0 0
HOM M #7 Large intestine [MA:0000333]
HOM M #2 Trigeminal V ganglion [MA:0001080] 0 0
HOM M #6 Seminal vesicle [MA:0000410]
HOM F #8 Skeletal muscle [MA:0003148]
HOM M #6 Lung [MA:0000415]
HOM M #2 Lymph node [MA:0000139] 0 0
HOM M #6 Small intestine [MA:0000337]
HOM F #8 Urinary bladder [MA:0000380]
HOM M #4 Adrenal gland [MA:0000116] 0 0
HOM M #4 Lymph node [MA:0000139] 1 0 Lymph node, mesenteric: Mild, paracortical lymphoid hyperplasia
HOM M #4 Trachea [MA:0000441] 0 0
HOM M #2 Urinary bladder [MA:0000380] 0 0
HOM M #4 Trigeminal V ganglion [MA:0001080] 0 0
HOM M #2 Skeletal muscle [MA:0003148] 0 0
HOM M #7 Pancreas [MA:0000120]
HOM M #4 Heart [MA:0000072] 0 0
HOM M #4 Esophagus [MA:0000352] 0 0
HOM M #4 Thyroid 0 0
HOM M #6 Thymus [MA:0000142]
HOM F #8 Liver [MA:0000358]
HOM M #6 Prostate gland [MA:0000404]
HOM F #3 Lymph node [MA:0000139] 0 0
HOM M #7 Spinal cord [MA:0000216]
HOM M #2 Trachea [MA:0000441] 0 0
HOM F #8 Femur [MA:0001359]
HOM F #5 Tooth [MA:0000348]
HOM M #7 Seminal vesicle [MA:0000410]
HOM M #7 Prostate gland [MA:0000404]
HOM F #3 Thyroid 0 0
HOM M #6 Spinal cord [MA:0000216]
HOM F #5 Stomach [MA:0000353]
HOM F #5 Bone marrow [MA:0000134]
HOM M #7 Kidney [MA:0000368]
HOM M #6 Kidney [MA:0000368]

Associated histopathology images

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