Histopathology data for Chct1

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM F #2 Femur [MA:0001359] 0 0
HOM M #1 Adrenal gland [MA:0000116] 0 0
HOM M #1 Gall bladder [MA:0000356] 0 0
HOM F #2 Gall bladder [MA:0000356] 0 0
HOM F #2 Adrenal gland [MA:0000116] 0 0
HOM M #3 Large intestine [MA:0000333] 0 0
HOM F #2 Pancreas [MA:0000120] 0 0
HOM M #1 Skin [MA:0000151] 0 0
HOM M #1 Lung [MA:0000415] 0 0
HOM F #4 Heart [MA:0000072] 0 0
HOM M #3 Prostate gland [MA:0000404] 0 0
HOM F #2 Lung [MA:0000415] 0 0
HOM M #1 Kidney [MA:0000368] 0 0
HOM F #4 Uterus [MA:0000389] 0 0
HOM F #2 Small intestine [MA:0000337] 0 0
HOM F #4 Esophagus [MA:0000352] 0 0
HOM M #1 Prostate gland [MA:0000404] 0 0
HOM F #2 Skin [MA:0000151] 0 0
HOM M #3 Esophagus [MA:0000352] 0 0
HOM F #4 Bone marrow [MA:0000134] 0 0
HOM M #3 Epididymis [MA:0000397] 0 0
HOM F #4 Trachea [MA:0000441] 0 0
HOM M #1 Small intestine [MA:0000337] 0 0
HOM F #4 Thymus [MA:0000142] 0 0
HOM M #1 Femur [MA:0001359] 0 0
HOM M #3 Skeletal muscle [MA:0003148] 0 0
HOM F #2 Kidney [MA:0000368] 0 0
HOM F #4 Liver [MA:0000358] 0 0
HOM M #1 Spinal cord [MA:0000216] 0 0
HOM F #4 Seminal vesicle [MA:0000410] Not applicable
HOM M #3 Gall bladder [MA:0000356] 0 0
HOM F #2 Spinal cord [MA:0000216] 0 0
HOM M #1 Spleen [MA:0000141] 0 0
HOM M #3 Femur [MA:0001359] 0 0
HOM M #1 Optic II nerve [MA:0001097] 0 0
HOM F #2 Optic II nerve [MA:0001097] 0 0
HOM F #2 Bone marrow [MA:0000134] 0 0
HOM F #2 Spleen [MA:0000141] 0 0
HOM F #2 Prostate gland [MA:0000404] Not applicable
HOM M #3 Kidney [MA:0000368] 0 0
HOM M #1 Bone marrow [MA:0000134] 0 0
HOM M #3 Sciatic nerve [MA:0001172] 0 0
HOM F #4 Brain [MA:0000168] 0 0
HOM F #2 Urinary bladder [MA:0000380] 0 0
HOM F #4 Lymph node [MA:0000139] 0 0
HOM M #1 Lymph node [MA:0000139] 0 0
HOM F #4 Urinary bladder [MA:0000380] 0 0
HOM M #3 Small intestine [MA:0000337] 0 0
HOM M #3 Heart [MA:0000072] 0 0
HOM F #2 Skeletal muscle [MA:0003148] 0 0
HOM F #4 Mammary gland [MA:0000145] 0 0
HOM M #1 Skeletal muscle [MA:0003148] 0 0
HOM F #4 Ovary [MA:0000384] 0 0
HOM M #1 Liver [MA:0000358] 0 0
HOM M #3 Adrenal gland [MA:0000116] 0 0
HOM F #4 Salivary gland [MA:0000346] 0 0
HOM F #2 Epididymis [MA:0000397] Not applicable
HOM M #3 Skin [MA:0000151] 0 0
HOM M #1 Epididymis [MA:0000397] 0 0
HOM M #3 Optic II nerve [MA:0001097] 0 0
HOM F #2 Liver [MA:0000358] 0 0
HOM F #2 Ovary [MA:0000384] 0 0
HOM M #3 Brain [MA:0000168] 0 0
HOM M #3 Thymus [MA:0000142] 0 0
HOM F #4 Adrenal gland [MA:0000116] 0 0
HOM F #4 Femur [MA:0001359] 0 0
HOM M #1 Ovary [MA:0000384] Not applicable
HOM F #4 Gall bladder [MA:0000356] 0 0
HOM M #3 Trachea [MA:0000441] 0 0
HOM M #3 Thyroid 0 0
HOM F #4 Skeletal muscle [MA:0003148] 0 0
HOM M #1 Heart [MA:0000072] 0 0
HOM F #4 Pancreas [MA:0000120] 0 0
HOM M #3 Seminal vesicle [MA:0000410] 0 0
HOM F #4 Skin [MA:0000151] 0 0
HOM F #2 Heart [MA:0000072] 0 0
HOM M #3 Bone marrow [MA:0000134] 0 0
HOM F #2 Lymph node [MA:0000139] 0 0
HOM M #3 Spleen [MA:0000141] 0 0
HOM M #3 Stomach [MA:0000353] 0 0
HOM F #4 Lung [MA:0000415] 0 0
HOM M #3 Testis [MA:0000411] 0 0
HOM M #1 Sciatic nerve [MA:0001172] 0 0
HOM F #4 Epididymis [MA:0000397] Not applicable
HOM M #1 Urinary bladder [MA:0000380] 0 0
HOM F #2 Sciatic nerve [MA:0001172] 0 0
HOM F #4 Large intestine [MA:0000333] 0 0
HOM M #3 Eye [MA:0000261] 0 0
HOM F #4 Testis [MA:0000411] Not applicable
HOM M #3 Spinal cord [MA:0000216] 0 0
HOM F #2 Salivary gland [MA:0000346] 0 0
HOM M #1 Salivary gland [MA:0000346] 0 0
HOM F #2 Mammary gland [MA:0000145] 0 0
HOM M #3 Uterus [MA:0000389] Not applicable
HOM M #3 Pancreas [MA:0000120] 0 0
HOM M #1 Mammary gland [MA:0000145] Not applicable
HOM F #4 Eye [MA:0000261] 0 0
HOM F #4 Spinal cord [MA:0000216] 0 0
HOM F #4 Thyroid 0 0
HOM F #2 Brain [MA:0000168] 0 0
HOM M #3 Liver [MA:0000358] 0 0
HOM F #2 Thymus [MA:0000142] 0 0
HOM M #1 Brain [MA:0000168] 0 0
HOM M #1 Seminal vesicle [MA:0000410] 0 0
HOM M #1 Thymus [MA:0000142] 0 0
HOM F #4 Stomach [MA:0000353] 0 0
HOM F #4 Spleen [MA:0000141] 0 0
HOM M #1 Stomach [MA:0000353] 0 0
HOM F #2 Seminal vesicle [MA:0000410] Not applicable
HOM F #4 Optic II nerve [MA:0001097] 0 0
HOM M #3 Mammary gland [MA:0000145] Not applicable
HOM F #2 Stomach [MA:0000353] 0 0
HOM F #2 Uterus [MA:0000389] 0 0
HOM M #1 Thyroid 0 0
HOM M #3 Ovary [MA:0000384] Not applicable
HOM F #2 Thyroid 0 0
HOM M #1 Esophagus [MA:0000352] 0 0
HOM F #4 Sciatic nerve [MA:0001172] 0 0
HOM M #3 Salivary gland [MA:0000346] 0 0
HOM M #1 Uterus [MA:0000389] Not applicable
HOM M #3 Lymph node [MA:0000139] 0 0
HOM M #3 Lung [MA:0000415] 0 0
HOM F #2 Testis [MA:0000411] Not applicable
HOM F #4 Prostate gland [MA:0000404] Not applicable
HOM F #4 Small intestine [MA:0000337] 0 0
HOM M #1 Pancreas [MA:0000120] 0 0
HOM M #1 Eye [MA:0000261] multi-localised chronic Retinal dysplasia.
HOM M #1 Trachea [MA:0000441] 0 0
HOM M #1 Testis [MA:0000411] 0 0
HOM F #2 Large intestine [MA:0000333] 0 0
HOM M #3 Urinary bladder [MA:0000380] 0 0
HOM F #2 Esophagus [MA:0000352] 0 0
HOM F #2 Eye [MA:0000261] 0 0
HOM M #1 Large intestine [MA:0000333] 0 0
HOM F #4 Kidney [MA:0000368] 0 0
HOM F #2 Trachea [MA:0000441] 0 0

Associated histopathology images

The IMPC Newsletter

Get highlights of the most important data releases, news and events, delivered straight to your email inbox

Subscribe to newsletter