Histopathology data for Aig1

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM F #1 Mammary gland [MA:0000145]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM M #4 Stomach [MA:0000353]
HOM F #3 Gall bladder [MA:0000356]
HOM M #2 Trachea [MA:0000441]
HOM M #2 Sternum [MA:0001331]
HOM M #2 Bone marrow [MA:0000134]
HOM M #4 Epididymis [MA:0000397]
HOM F #1 Bone [MA:0001459]
HOM F #3 Sciatic nerve [MA:0001172]
HOM M #4 Heart [MA:0000072]
HOM F #3 Kidney [MA:0000368]
HOM M #2 Skeletal muscle [MA:0003148]
HOM M #4 Urinary bladder [MA:0000380]
HOM F #1 Brain [MA:0000168]
HOM M #4 Spinal cord [MA:0000216]
HOM F #1 Thymus [MA:0000142]
HOM F #3 Adrenal gland [MA:0000116]
HOM F #3 Tongue [MA:0000347]
HOM F #3 Lung [MA:0000415]
HOM F #1 Skin [MA:0000151]
HOM F #3 Sternum [MA:0001331]
HOM F #1 Femur [MA:0001359]
HOM M #2 Gall bladder [MA:0000356]
HOM M #4 Salivary gland [MA:0000346]
HOM F #1 Small intestine [MA:0000337]
HOM F #1 Salivary gland [MA:0000346]
HOM M #4 Esophagus [MA:0000352]
HOM M #2 Spleen [MA:0000141]
HOM F #1 Uterus [MA:0000389]
HOM M #2 Adrenal gland [MA:0000116]
HOM F #1 Tibia [MA:0001361]
HOM F #1 Ear [MA:0000236]
HOM F #3 Thyroid
HOM M #4 Nasal cavity [MA:0000284]
HOM F #3 Spinal cord [MA:0000216]
HOM F #3 Ovary [MA:0000384]
HOM M #2 Seminal vesicle [MA:0000410]
HOM M #4 Skin [MA:0000151]
HOM F #1 Spleen [MA:0000141]
HOM M #4 Lung [MA:0000415]
HOM F #1 Esophagus [MA:0000352]
HOM F #3 Ear [MA:0000236]
HOM M #4 Small intestine [MA:0000337]
HOM M #2 Lung [MA:0000415]
HOM M #2 Tongue [MA:0000347]
HOM M #4 Tongue [MA:0000347]
HOM M #2 Small intestine [MA:0000337]
HOM F #1 Liver [MA:0000358]
HOM M #4 Brain [MA:0000168] 1 0 mild hydrocephalus
HOM M #4 Femur [MA:0001359]
HOM F #1 Urinary bladder [MA:0000380]
HOM M #4 Thyroid
HOM F #3 Thymus [MA:0000142]
HOM F #1 Sternum [MA:0001331]
HOM F #3 Lymph node [MA:0000139]
HOM M #4 Large intestine [MA:0000333]
HOM M #4 Seminal vesicle [MA:0000410]
HOM M #2 Brain [MA:0000168] 1 0 mild hydrocephalus
HOM F #3 Trachea [MA:0000441]
HOM F #3 Knee joint [MA:0000471]
HOM M #2 Skin [MA:0000151]
HOM M #2 Nasal cavity [MA:0000284]
HOM F #1 Skeletal muscle [MA:0003148]
HOM F #1 Pancreas [MA:0000120]
HOM M #4 Kidney [MA:0000368]
HOM F #3 Urinary bladder [MA:0000380]
HOM M #2 Thymus [MA:0000142]
HOM F #1 Ovary [MA:0000384]
HOM M #4 Liver [MA:0000358]
HOM M #2 Spinal cord [MA:0000216]
HOM M #2 Thyroid
HOM F #1 Thyroid
HOM F #3 Mammary gland [MA:0000145]
HOM F #3 Large intestine [MA:0000333]
HOM M #2 Prostate gland [MA:0000404]
HOM M #4 Pancreas [MA:0000120]
HOM F #3 Uterus [MA:0000389]
HOM F #3 Spleen [MA:0000141]
HOM M #2 Bone [MA:0001459]
HOM F #3 Brain [MA:0000168]
HOM M #4 Thymus [MA:0000142]
HOM F #1 Lung [MA:0000415]
HOM M #2 Kidney [MA:0000368]
HOM F #1 Tongue [MA:0000347]
HOM F #3 Small intestine [MA:0000337]
HOM F #3 Pancreas [MA:0000120]
HOM F #3 Skeletal muscle [MA:0003148]
HOM F #1 Kidney [MA:0000368]
HOM F #3 Skin [MA:0000151]
HOM M #2 Knee joint [MA:0000471]
HOM F #3 Liver [MA:0000358]
HOM F #1 Trachea [MA:0000441]
HOM M #2 Lymph node [MA:0000139]
HOM F #1 Lymph node [MA:0000139]
HOM F #1 Knee joint [MA:0000471]
HOM F #1 Spinal cord [MA:0000216]
HOM M #2 Esophagus [MA:0000352]
HOM F #3 Femur [MA:0001359]
HOM F #1 Eye [MA:0000261]
HOM M #4 Lymph node [MA:0000139]
HOM M #4 Knee joint [MA:0000471]
HOM M #4 Skeletal muscle [MA:0003148]
HOM F #3 Tooth [MA:0000348]
HOM M #2 Urinary bladder [MA:0000380]
HOM M #2 Epididymis [MA:0000397]
HOM M #2 Liver [MA:0000358]
HOM M #2 Pancreas [MA:0000120]
HOM M #4 Ear [MA:0000236]
HOM M #4 Trachea [MA:0000441]
HOM F #3 Brown adipose tissue [MA:0000057]
HOM F #1 Nasal cavity [MA:0000284]
HOM F #3 Salivary gland [MA:0000346]
HOM M #4 Prostate gland [MA:0000404]
HOM M #4 Spleen [MA:0000141]
HOM M #4 Bone [MA:0001459]
HOM F #3 Esophagus [MA:0000352]
HOM F #1 Gall bladder [MA:0000356]
HOM M #2 Salivary gland [MA:0000346]
HOM M #4 Adrenal gland [MA:0000116]
HOM M #4 Sternum [MA:0001331]
HOM F #1 Trigeminal V ganglion [MA:0001080]
HOM M #2 Femur [MA:0001359]
HOM M #2 Trigeminal V ganglion [MA:0001080]
HOM F #3 Bone [MA:0001459]
HOM F #1 Adrenal gland [MA:0000116]
HOM M #2 Heart [MA:0000072]
HOM F #1 Heart [MA:0000072]
HOM F #1 Large intestine [MA:0000333]
HOM M #2 Tibia [MA:0001361]
HOM M #2 Large intestine [MA:0000333]
HOM M #4 Testis [MA:0000411]
HOM M #4 Gall bladder [MA:0000356]
HOM F #3 Nasal cavity [MA:0000284]
HOM F #1 Bone marrow [MA:0000134]
HOM F #3 Stomach [MA:0000353]
HOM M #4 Tibia [MA:0001361]
HOM F #3 Trigeminal V ganglion [MA:0001080]
HOM M #2 Testis [MA:0000411]
HOM M #4 Sciatic nerve [MA:0001172]
HOM M #2 Eye [MA:0000261]
HOM F #3 Heart [MA:0000072]
HOM M #2 Tooth [MA:0000348]
HOM F #3 Tibia [MA:0001361]
HOM F #3 Eye [MA:0000261] 3 0 unilateral Unilateral phthisis bulbi and Harderian gland atrophy
HOM F #3 Bone marrow [MA:0000134]
HOM M #4 Brown adipose tissue [MA:0000057] 1 0 mild focally extensive chronic histiocytic steatitis
HOM F #1 Sciatic nerve [MA:0001172]
HOM F #1 Tooth [MA:0000348]
HOM M #4 Tooth [MA:0000348]
HOM M #2 Stomach [MA:0000353]
HOM M #2 Sciatic nerve [MA:0001172]
HOM M #4 Bone marrow [MA:0000134]
HOM F #1 Stomach [MA:0000353]
HOM M #2 Brown adipose tissue [MA:0000057]
HOM M #4 Eye [MA:0000261]
HOM F #1 Brown adipose tissue [MA:0000057]

Associated histopathology images

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