Ontologies in Procedure: X-ray JAXLA_XRY_001

procedureMetadata: Scanner equipment model JAXLA_XRY_046_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Number of thoracic vertebrae JAXLA_XRY_014_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal thoracic vertebrae morphology
INCREASED increased thoracic vertebrae number
DECREASED decreased thoracic vertebrae number

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal thoracic vertebrae morphology

Ontology ID: MP:0003047

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: increased thoracic vertebrae number

Ontology ID: MP:0004651

Sex:

DECREASED

Option:

Increment ID:

Ontology Term: decreased thoracic vertebrae number

Ontology ID: MP:0004648

Sex:

simpleParameter: Free Ontology JAXLA_XRY_054_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Humerus JAXLA_XRY_021_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal humerus morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal humerus morphology

Ontology ID: MP:0005296

Sex:

seriesMediaParameter: XRay Images Skull Dorso Ventral Orientation JAXLA_XRY_051_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Maxilla/Pre-maxilla JAXLA_XRY_003_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal maxilla morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal maxilla morphology

Ontology ID: MP:0000455

Sex:

simpleParameter: Joints JAXLA_XRY_027_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal joint morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal joint morphology

Ontology ID: MP:0002932

Sex:

simpleParameter: Skull shape JAXLA_XRY_001_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal cranium morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal cranium morphology

Ontology ID: MP:0000438

Sex:

simpleParameter: Processes on vertebrae JAXLA_XRY_020_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebral arch morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebral arch morphology

Ontology ID: MP:0004599

Sex:

simpleParameter: Number of digits JAXLA_XRY_028_001

Option Increment Ontology Term Ontology ID Sex
INCREASED polydactyly
ABNORMAL abnormal digit morphology
DECREASED oligodactyly

INCREASED

Option:

Increment ID:

Ontology Term: polydactyly

Ontology ID: MP:0000562

Sex:

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal digit morphology

Ontology ID: MP:0002110

Sex:

DECREASED

Option:

Increment ID:

Ontology Term: oligodactyly

Ontology ID: MP:0000565

Sex:

simpleParameter: Transitional vertebrae JAXLA_XRY_060_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL vertebral transformation

ABNORMAL

Option:

Increment ID:

Ontology Term: vertebral transformation

Ontology ID: MP:0003036

Sex:

simpleParameter: Shape of ribcage JAXLA_XRY_059_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal thoracic cage shape

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal thoracic cage shape

Ontology ID: MP:0010099

Sex:

procedureMetadata: Date Xray equipment last calibrated JAXLA_XRY_047_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Polysyndactylism JAXLA_XRY_062_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL polysyndactyly

ABNORMAL

Option:

Increment ID:

Ontology Term: polysyndactyly

Ontology ID: MP:0004083

Sex:

simpleParameter: Caudal vertebrae morphology JAXLA_XRY_074_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal caudal vertebrae morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal caudal vertebrae morphology

Ontology ID: MP:0002759

Sex:

seriesMediaParameter: XRay Images Whole Body Lateral Orientation JAXLA_XRY_048_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Scapulae JAXLA_XRY_006_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal scapula morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal scapula morphology

Ontology ID: MP:0000149

Sex:

simpleParameter: Sacral processes JAXLA_XRY_066_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebral arch morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebral arch morphology

Ontology ID: MP:0004599

Sex:

simpleParameter: Number of ribs right JAXLA_XRY_008_001

Option Increment Ontology Term Ontology ID Sex
DECREASED decreased rib number
ABNORMAL abnormal rib morphology
INCREASED increased rib number

DECREASED

Option:

Increment ID:

Ontology Term: decreased rib number

Ontology ID: MP:0003345

Sex:

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal rib morphology

Ontology ID: MP:0000150

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: increased rib number

Ontology ID: MP:0000480

Sex:

simpleParameter: Fibula JAXLA_XRY_026_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal fibula morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal fibula morphology

Ontology ID: MP:0002187

Sex:

procedureMetadata: Scanner equipment ID JAXLA_XRY_044_001

There are no Basic Ontology Annotation associations for this Parameter

procedureMetadata: Date Scanner equipment last calibrated JAXLA_XRY_053_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Femur JAXLA_XRY_024_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal femur morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal femur morphology

Ontology ID: MP:0000559

Sex:

simpleParameter: Fusion of ribs JAXLA_XRY_011_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL rib fusion

ABNORMAL

Option:

Increment ID:

Ontology Term: rib fusion

Ontology ID: MP:0000154

Sex:

simpleParameter: Pelvis JAXLA_XRY_012_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal pelvic girdle bone morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal pelvic girdle bone morphology

Ontology ID: MP:0004509

Sex:

simpleParameter: Kyphosis JAXLA_XRY_057_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL kyphosis

ABNORMAL

Option:

Increment ID:

Ontology Term: kyphosis

Ontology ID: MP:0000160

Sex:

simpleParameter: Number of cervical vertebrae JAXLA_XRY_013_001

Option Increment Ontology Term Ontology ID Sex
DECREASED decreased cervical vertebrae number
ABNORMAL abnormal cervical vertebrae morphology
INCREASED increased cervical vertebrae number

DECREASED

Option:

Increment ID:

Ontology Term: decreased cervical vertebrae number

Ontology ID: MP:0004646

Sex:

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal cervical vertebrae morphology

Ontology ID: MP:0003048

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: increased cervical vertebrae number

Ontology ID: MP:0010100

Sex:

simpleParameter: Tibia length JAXLA_XRY_033_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal tibia morphology
DECREASED short tibia
INCREASED long tibia

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal tibia morphology

Ontology ID: MP:0000558

Sex:

DECREASED

Option:

Increment ID:

Ontology Term: short tibia

Ontology ID: MP:0002764

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: long tibia

Ontology ID: MP:0004357

Sex:

procedureMetadata: Scanner equipment manufacturer JAXLA_XRY_045_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Tibia JAXLA_XRY_025_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal tibia morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal tibia morphology

Ontology ID: MP:0000558

Sex:

simpleParameter: Comment on XRay image JAXLA_XRY_032_001

There are no Basic Ontology Annotation associations for this Parameter

seriesMediaParameter: XRay Images Hind Leg and Hip JAXLA_XRY_052_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Number of ribs left JAXLA_XRY_009_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal rib morphology
DECREASED decreased rib number
INCREASED increased rib number

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal rib morphology

Ontology ID: MP:0000150

Sex:

DECREASED

Option:

Increment ID:

Ontology Term: decreased rib number

Ontology ID: MP:0003345

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: increased rib number

Ontology ID: MP:0000480

Sex:

simpleParameter: Teeth JAXLA_XRY_005_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal tooth morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal tooth morphology

Ontology ID: MP:0002100

Sex:

simpleParameter: Mandibles JAXLA_XRY_004_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal mandible morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal mandible morphology

Ontology ID: MP:0000458

Sex:

simpleParameter: Fusion of processes JAXLA_XRY_061_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL fusion of vertebral arches

ABNORMAL

Option:

Increment ID:

Ontology Term: fusion of vertebral arches

Ontology ID: MP:0004613

Sex:

seriesMediaParameter: XRay Images Whole Body Dorso Ventral JAXLA_XRY_034_001

There are no Basic Ontology Annotation associations for this Parameter

seriesMediaParameter: XRay Images Forepaw JAXLA_XRY_049_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Thoracic processes JAXLA_XRY_064_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebral arch morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebral arch morphology

Ontology ID: MP:0004599

Sex:

simpleParameter: Lumbar processes JAXLA_XRY_065_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebral arch morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebral arch morphology

Ontology ID: MP:0004599

Sex:

simpleParameter: Ulna JAXLA_XRY_023_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal ulna morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal ulna morphology

Ontology ID: MP:0005108

Sex:

seriesMediaParameter: XRay Images Skull Lateral Orientation JAXLA_XRY_050_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Missing cranial rib JAXLA_XRY_068_001

There are no Basic Ontology Annotation associations for this Parameter

procedureMetadata: Voltage settings JAXLA_XRY_043_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Number of lumbar vertebrae JAXLA_XRY_015_001

Option Increment Ontology Term Ontology ID Sex
DECREASED decreased lumbar vertebrae number
ABNORMAL abnormal lumbar vertebrae morphology
INCREASED increased lumbar vertebrae number

DECREASED

Option:

Increment ID:

Ontology Term: decreased lumbar vertebrae number

Ontology ID: MP:0004647

Sex:

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal lumbar vertebrae morphology

Ontology ID: MP:0003049

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: increased lumbar vertebrae number

Ontology ID: MP:0004650

Sex:

simpleParameter: Radius JAXLA_XRY_022_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal radius morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal radius morphology

Ontology ID: MP:0000552

Sex:

simpleParameter: Shape of vertebrae JAXLA_XRY_018_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebrae morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebrae morphology

Ontology ID: MP:0000137

Sex:

simpleParameter: Shape of ribs JAXLA_XRY_010_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal rib morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal rib morphology

Ontology ID: MP:0000150

Sex:

simpleParameter: Shape of spine JAXLA_XRY_055_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal spine curvature

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal spine curvature

Ontology ID: MP:0004174

Sex:

procedureMetadata: Settings time of exposure JAXLA_XRY_039_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Cervical processes JAXLA_XRY_063_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebral arch morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebral arch morphology

Ontology ID: MP:0004599

Sex:

procedureMetadata: Settings level JAXLA_XRY_040_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Pelvic vertebrae morphology JAXLA_XRY_073_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal sacral vertebrae morphology
ABNORMAL abnormal abnormal sacral vertebrae morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal sacral vertebrae morphology

Ontology ID: MP:0003050

Sex:

ABNORMAL

Option: abnormal

Increment ID:

Ontology Term: abnormal sacral vertebrae morphology

Ontology ID: MP:0003050

Sex:

simpleParameter: Lordosis JAXLA_XRY_058_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL lordosis

ABNORMAL

Option:

Increment ID:

Ontology Term: lordosis

Ontology ID: MP:0000162

Sex:

simpleParameter: Caudal processes JAXLA_XRY_067_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal vertebral arch morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal vertebral arch morphology

Ontology ID: MP:0004599

Sex:

procedureMetadata: Experimenter ID (scan) JAXLA_XRY_041_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Digit integrity JAXLA_XRY_031_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal digit morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal digit morphology

Ontology ID: MP:0002110

Sex:

simpleParameter: Zygomatic bone JAXLA_XRY_002_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal zygomatic bone morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal zygomatic bone morphology

Ontology ID: MP:0005270

Sex:

simpleParameter: Thoracic vertebrae morphology JAXLA_XRY_071_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal thoracic vertebrae morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal thoracic vertebrae morphology

Ontology ID: MP:0003047

Sex:

procedureMetadata: Xray equipment model JAXLA_XRY_038_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Brachydactyly JAXLA_XRY_030_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL brachydactyly

ABNORMAL

Option:

Increment ID:

Ontology Term: brachydactyly

Ontology ID: MP:0002544

Sex:

simpleParameter: Clavicle JAXLA_XRY_007_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal clavicle morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal clavicle morphology

Ontology ID: MP:0005298

Sex:

simpleParameter: Number of caudal vertebrae JAXLA_XRY_017_001

Option Increment Ontology Term Ontology ID Sex
DECREASED decreased caudal vertebrae number
INCREASED increased caudal vertebrae number
ABNORMAL abnormal caudal vertebrae morphology

DECREASED

Option:

Increment ID:

Ontology Term: decreased caudal vertebrae number

Ontology ID: MP:0001539

Sex:

INCREASED

Option:

Increment ID:

Ontology Term: increased caudal vertebrae number

Ontology ID: MP:0010102

Sex:

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal caudal vertebrae morphology

Ontology ID: MP:0002759

Sex:

simpleParameter: Rib morphology JAXLA_XRY_069_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal rib morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal rib morphology

Ontology ID: MP:0000150

Sex:

procedureMetadata: Xray equipment manufacturer JAXLA_XRY_037_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Fusion of vertebrae JAXLA_XRY_019_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL vertebral fusion

ABNORMAL

Option:

Increment ID:

Ontology Term: vertebral fusion

Ontology ID: MP:0004609

Sex:

simpleParameter: Number of pelvic vertebrae JAXLA_XRY_016_001

Option Increment Ontology Term Ontology ID Sex
INCREASED increased sacral vertebrae number
ABNORMAL abnormal sacral vertebrae morphology
DECREASED decreased sacral vertebrae number

INCREASED

Option:

Increment ID:

Ontology Term: increased sacral vertebrae number

Ontology ID: MP:0010101

Sex:

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal sacral vertebrae morphology

Ontology ID: MP:0003050

Sex:

DECREASED

Option:

Increment ID:

Ontology Term: decreased sacral vertebrae number

Ontology ID: MP:0004649

Sex:

simpleParameter: Syndactylism JAXLA_XRY_029_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL syndactyly

ABNORMAL

Option:

Increment ID:

Ontology Term: syndactyly

Ontology ID: MP:0000564

Sex:

simpleParameter: Lumbar vertebrae morphology JAXLA_XRY_072_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal lumbar vertebrae morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal lumbar vertebrae morphology

Ontology ID: MP:0003049

Sex:

procedureMetadata: Experimenter ID (analysis) JAXLA_XRY_042_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Alive JAXLA_XRY_035_001

There are no Basic Ontology Annotation associations for this Parameter

simpleParameter: Cervical vertebrae morphology JAXLA_XRY_070_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL abnormal cervical vertebrae morphology

ABNORMAL

Option:

Increment ID:

Ontology Term: abnormal cervical vertebrae morphology

Ontology ID: MP:0003048

Sex:

simpleParameter: Scoliosis JAXLA_XRY_056_001

Option Increment Ontology Term Ontology ID Sex
ABNORMAL scoliosis

ABNORMAL

Option:

Increment ID:

Ontology Term: scoliosis

Ontology ID: MP:0000161

Sex:

procedureMetadata: Xray equipment ID JAXLA_XRY_036_001

There are no Basic Ontology Annotation associations for this Parameter