Gene: Smarcd2 MGI:1933621
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The IMPC applies a panel of phenotyping screens to characterise single-gene knockout mice by comparison to wild types. Click on the different tabs to visualise significant phenotypes identified by the IMPC, as well as all data that was measured.
Phenotype | System | Allele | Zyg | Sex | Life Stage | P Value |
---|---|---|---|---|---|---|
edema | Smarcd2tm1.1(KOMP)Vlcg | HOM | E15.5 | 0.00 | ||
increased mean corpuscular volume | Smarcd2tm1.1(KOMP)Vlcg | HET | Early adult | 2.38×10-05 | ||
decreased prepulse inhibition | Smarcd2tm1.1(KOMP)Vlcg | HET | Early adult | 4.11×10-05 | ||
edema | Smarcd2tm1.1(KOMP)Vlcg | HET | E15.5 | 0.00 | ||
preweaning lethality, incomplete penetrance | Smarcd2tm1.1(KOMP)Vlcg | HOM | Early adult | 0.00 |
An assay measuring the expression of lacZ shows the tissue where the gene is expressed.
Anatomy | Images | Zygosity | Mutant Expr |
---|---|---|---|
Adrenal gland | N/A | heterozygote | 100% (4 of 4) |
Aorta | N/A | heterozygote | 0.0% (0 of 4) |
Blood | N/A | heterozygote | 0.0% (0 of 2) |
Bone marrow | N/A | heterozygote | 0.0% (0 of 2) |
Brain | N/A | heterozygote | 100% (4 of 4) |
Brainstem | N/A | heterozygote | 50% (2 of 4) |
Brown adipose tissue | N/A | heterozygote | 50% (2 of 4) |
Cartilage tissue | N/A | heterozygote | 0.0% (0 of 4) |
Cecum | N/A | heterozygote | 0.0% (0 of 2) |
Cerebellum | N/A | heterozygote | 75% (3 of 4) |
Cerebral cortex | N/A | heterozygote | 25% (1 of 4) |
Chest bone | N/A | heterozygote | Not available |
Colon | N/A | heterozygote | 100% (2 of 2) |
Diaphragm | N/A | heterozygote | 0.0% (0 of 2) |
Duodenum | N/A | heterozygote | 50% (1 of 2) |
Epididymis | N/A | heterozygote | 66.67% (2 of 3) |
Esophagus | N/A | heterozygote | 50% (2 of 4) |
Eye | N/A | heterozygote | 75% (3 of 4) |
Gall bladder | N/A | heterozygote | Not available |
Gonadal fat pad | N/A | heterozygote | 0.0% (0 of 2) |
Harderian gland | N/A | heterozygote | 100% (2 of 2) |
Heart | N/A | heterozygote | 50% (2 of 4) |
Hindlimb | N/A | heterozygote | Not available |
Hippocampus | N/A | heterozygote | 25% (1 of 4) |
Hypothalamus | N/A | heterozygote | 50% (2 of 4) |
Ileum | N/A | heterozygote | 100% (2 of 2) |
Jejunum | N/A | heterozygote | Not available |
Kidney | N/A | heterozygote | 100% (4 of 4) |
Large intestine | N/A | heterozygote | 75% (3 of 4) |
Liver | N/A | heterozygote | 75% (3 of 4) |
Lower urinary tract | N/A | heterozygote | 0.0% (0 of 4) |
Lung | N/A | heterozygote | 25% (1 of 4) |
Lymph node | N/A | heterozygote | 50% (2 of 4) |
Mammary gland | N/A | heterozygote | 25% (1 of 4) |
Mesenteric adipose tissue | N/A | heterozygote | 0.0% (0 of 2) |
Mesenteric lymph node | N/A | heterozygote | 0.0% (0 of 2) |
Midbrain | N/A | heterozygote | 100% (2 of 2) |
Olfactory lobe | N/A | heterozygote | 50% (2 of 4) |
Ovary | N/A | heterozygote | 25% (1 of 4) |
Oviduct | N/A | heterozygote | 25% (1 of 4) |
Pancreas | N/A | heterozygote | 50% (2 of 4) |
Parathyroid gland | N/A | heterozygote | 50% (1 of 2) |
Parotid gland | N/A | heterozygote | 100% (2 of 2) |
Penis | N/A | heterozygote | 50% (1 of 2) |
Peripheral nervous system | N/A | heterozygote | 0.0% (0 of 4) |
Peyer's patch | N/A | heterozygote | 0.0% (0 of 4) |
Pituitary gland | N/A | heterozygote | 50% (2 of 4) |
Prostate gland | N/A | heterozygote | 50% (2 of 4) |
Quadriceps | N/A | heterozygote | 0.0% (0 of 2) |
Sciatic nerve | N/A | heterozygote | 0.0% (0 of 2) |
Skeletal muscle | N/A | heterozygote | 50% (2 of 4) |
Skin | N/A | heterozygote | 75% (3 of 4) |
Small intestine | N/A | heterozygote | 100% (4 of 4) |
Spinal cord | N/A | heterozygote | 0.0% (0 of 4) |
Spleen | N/A | heterozygote | 25% (1 of 4) |
Stomach pyloric region | N/A | heterozygote | Not available |
Stomach | N/A | heterozygote | 100% (4 of 4) |
Striatum | N/A | heterozygote | 0.0% (0 of 4) |
Sublingual gland | N/A | heterozygote | 100% (2 of 2) |
Submandibular gland | N/A | heterozygote | 50% (1 of 2) |
Testis | N/A | heterozygote | 25% (1 of 4) |
Thymus | N/A | heterozygote | 100% (4 of 4) |
Thyroid gland | N/A | heterozygote | 75% (3 of 4) |
Tongue | N/A | heterozygote | 100% (2 of 2) |
Trachea | N/A | heterozygote | 100% (4 of 4) |
Trigeminal V nerve | N/A | heterozygote | 100% (2 of 2) |
Urinary bladder | N/A | heterozygote | 100% (2 of 2) |
Uterus | N/A | heterozygote | 50% (2 of 4) |
Vagina | N/A | heterozygote | 50% (1 of 2) |
Vas deferens | N/A | heterozygote | 50% (1 of 2) |
Vascular system | N/A | heterozygote | 0.0% (0 of 4) |
Vesicular gland | N/A | heterozygote | 50% (1 of 2) |
White adipose tissue | N/A | heterozygote | 0.0% (0 of 4) |
An assay measuring the expression of lacZ shows the tissue where the gene is expressed.
Anatomy | Images | Zygosity | Mutant Expr |
---|---|---|---|
Axial skeleton | N/A | heterozygote | 0.0% (0 of 2) |
N/A | Ambiguous | ||
Brain | N/A | heterozygote | 40% (2 of 5) |
Brain | N/A | homozygote | Ambiguous |
Central nervous system ganglion | N/A | heterozygote | 100% (2 of 2) |
N/A | Ambiguous | ||
Ear | N/A | heterozygote | 0.0% (0 of 5) |
Ear | N/A | homozygote | Ambiguous |
Embryo | N/A | heterozygote | 40% (2 of 5) |
Embryo | N/A | homozygote | Ambiguous |
Eye | N/A | heterozygote | 40% (2 of 5) |
Eye | N/A | homozygote | Ambiguous |
Footplate | N/A | heterozygote | 0.0% (0 of 5) |
Footplate | N/A | homozygote | Ambiguous |
Forebrain | N/A | heterozygote | 40% (2 of 5) |
Forebrain | N/A | homozygote | Ambiguous |
Forelimb | N/A | heterozygote | 0.0% (0 of 5) |
Forelimb | N/A | homozygote | Ambiguous |
Gut | N/A | heterozygote | 100% (2 of 2) |
N/A | Ambiguous | ||
Handplate | N/A | heterozygote | 0.0% (0 of 5) |
Handplate | N/A | homozygote | Ambiguous |
Head | N/A | heterozygote | 0.0% (0 of 5) |
Head | N/A | homozygote | Ambiguous |
Heart | N/A | heterozygote | 40% (2 of 5) |
Heart | N/A | homozygote | Ambiguous |
Hindbrain | N/A | heterozygote | 40% (2 of 5) |
Hindbrain | N/A | homozygote | Ambiguous |
Hindlimb | N/A | heterozygote | 0.0% (0 of 5) |
Hindlimb | N/A | homozygote | Ambiguous |
Liver | N/A | heterozygote | 40% (2 of 5) |
Liver | N/A | homozygote | Ambiguous |
Lung | N/A | heterozygote | 0.0% (0 of 5) |
Lung | N/A | homozygote | Ambiguous |
Mandibular process | N/A | heterozygote | 0.0% (0 of 5) |
Mandibular process | N/A | homozygote | Ambiguous |
Maxillary process | N/A | heterozygote | 0.0% (0 of 5) |
Maxillary process | N/A | homozygote | Ambiguous |
Midbrain | N/A | heterozygote | 40% (2 of 5) |
Midbrain | N/A | homozygote | Ambiguous |
Nose | N/A | heterozygote | 0.0% (0 of 2) |
N/A | Ambiguous | ||
Oral cavity | N/A | heterozygote | 0.0% (0 of 5) |
Oral cavity | N/A | homozygote | Ambiguous |
Chorioallantoic placenta | N/A | heterozygote | 100% (2 of 2) |
N/A | Ambiguous | ||
Skeleton | N/A | heterozygote | 0.0% (0 of 2) |
N/A | Ambiguous | ||
Skin | N/A | heterozygote | 40% (2 of 5) |
Skin | N/A | homozygote | Ambiguous |
Spinal cord | N/A | heterozygote | 100% (2 of 2) |
N/A | Ambiguous | ||
Tail somite | N/A | heterozygote | 40% (2 of 5) |
Tail somite | N/A | homozygote | Ambiguous |
Tail | N/A | heterozygote | 0.0% (0 of 5) |
Tail | N/A | homozygote | Ambiguous |
Trachea | N/A | heterozygote | 0.0% (0 of 2) |
N/A | Ambiguous | ||
Urinary system | N/A | heterozygote | 100% (2 of 2) |
N/A | Ambiguous |
Background staining occurs in wild type mice and embryos at an incidental rate.
Anatomy | Background staining in controls (WT) |
---|---|
adrenal gland | 0.0% |
aorta | 0.0% |
blood | |
bone marrow | |
brain | 0.0% |
brainstem | 0.0% |
brown adipose tissue | 0.0% |
cartilage tissue | 0.0% |
cecum | 0.0% |
cerebellum | 0.0% |
cerebral cortex | 0.0% |
chest bone | |
colon | |
diaphragm | 0.0% |
duodenum | 0.0% |
epididymis | Unavailable |
esophagus | 0.0% |
eye | 0.0% |
gall bladder | 0.0% |
gonadal fat pad | 0.0% |
harderian gland | |
heart | 0.0% |
hindlimb | 0.0% |
hippocampus | 0.0% |
hypothalamus | 0.0% |
ileum | 0.0% |
jejunum | |
kidney | 0.0% |
large intestine | 0.0% |
liver | 0.0% |
lower urinary tract | 0.0% |
lung | 0.0% |
lymph node | 0.0% |
mammary gland | 0.0% |
mesenteric adipose tissue | 0.0% |
mesenteric lymph node | |
midbrain | 0.0% |
olfactory lobe | 0.0% |
ovary | 0.0% |
oviduct | 0.0% |
pancreas | 0.0% |
parathyroid gland | 0.0% |
parotid gland | 0.0% |
penis | 0.0% |
peripheral nervous system | 0.0% |
peyers patch | 0.0% |
pituitary gland | 0.0% |
prostate gland | 0.0% |
quadriceps | 0.0% |
sciatic nerve | 0.0% |
skeletal muscle | 0.0% |
skin | 0.0% |
small intestine | 0.0% |
spinal cord | 0.0% |
spleen | 0.0% |
stomach | 0.0% |
stomach pyloric region | 0.0% |
striatum | 0.0% |
sublingual gland | 0.0% |
submandibular gland | 0.0% |
testis | 0.0% |
thymus | 0.0% |
thyroid gland | 0.0% |
tongue | 0.0% |
trachea | 0.0% |
trigeminal v nerve | 0.0% |
urinary bladder | |
uterus | 0.0% |
vagina | 0.0% |
vas deferens | Unavailable |
vascular system | 0.0% |
vesicular gland | Unavailable |
white adipose tissue | 0.0% |
Background staining occurs in wild type mice and embryos at an incidental rate.
Background staining occurs in wild type embryos at a measurable rate.
Anatomy | Background staining in controls(WT) |
---|---|
axial skeleton | Ambiguous |
brain | 0.0% |
central nervous system ganglion | Ambiguous |
ear | 0.0% |
embryo | 0.0% |
eye | 0.0% |
footplate | 0.0% |
forebrain | 0.0% |
forelimb | 0.0% |
gut | Ambiguous |
handplate | 0.0% |
head | 0.0% |
heart | 0.0% |
hindbrain | 0.0% |
hindlimb | 0.0% |
liver | 0.0% |
lung | 0.0% |
mandibular process | 0.0% |
maxillary process | 0.0% |
midbrain | 0.0% |
nose | Ambiguous |
oral cavity | 0.0% |
placenta | Ambiguous |
skeleton | Ambiguous |
skin | 0.0% |
spinal cord | Ambiguous |
tail | 0.0% |
tail somite group | 0.0% |
trachea | Ambiguous |
urinary system | Ambiguous |
Human diseases caused by Smarcd2 mutations
The analysis uses data from IMPC, along with published data on other mouse mutants, in comparison to human disease reports in OMIM, Orphanet, and DECIPHER.
Phenotype comparisons summarize the similarity of mouse phenotypes with human disease phenotypes.
The table below shows human diseases associated to Smarcd2 by orthology or direct annotation.
Disease | Similarity of phenotypes |
Matching phenotypes | Source |
---|---|---|---|
Specific Granule Deficiency 2 | Anemia, Absent neutrophil specific granules, Thrombocytopenia, Neutropenia | OMIM:617475 |
The table below shows human diseases predicted to be associated to Smarcd2 by phenotypic similarity.
IMPC related publications
The table below lists publications which used either products generated by the IMPC or data produced by the phenotyping efforts of the IMPC. These publications have also been associated to Smarcd2.
There are 2 publications which use IMPC produced mice or data.
Title | Journal | IMPC Allele | PubMed ID |
---|---|---|---|
Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes. | Nature genetics (April 2017) | Smarcd2tm1(KOMP)Vlcg | PMC5885283 |
Baf60b-mediated ATM-p53 activation blocks cell identity conversion by sensing chromatin opening. | Cell research (March 2017) | Smarcd2tm1.1(KOMP)Vlcg | PMC5520852 |
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MGI Allele | Allele Type | Produced |
---|---|---|
Smarcd2tm437304(L1L2_GT0_LF2A_LacZ_BetactP_neo) | KO first allele (reporter-tagged insertion with conditional potential) | Targeting vectors |
Smarcd2tm437304(L1L2_Bact_P) | KO first allele (reporter-tagged insertion with conditional potential) | Targeting vectors |
Smarcd2tm96137(L1L2_Bact_P) | Reporter-tagged deletion allele (with selection cassette) | Targeting vectors |
Smarcd2tm1.1(KOMP)Vlcg | Reporter-tagged deletion allele (post Cre, with no selection cassette) | Mice, Tissue |
Smarcd2tm1(KOMP)Vlcg | Reporter-tagged deletion allele (with selection cassette) | Mice, ES Cells |
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