IMPC Gene variants with corneal opacity
Total number of significant genotype-phenotype associations: 116
Gene / Allele | Zygosity | Sex | Life Stage | Phenotype | Parameter | Phenotyping Center |
P Value |
---|---|---|---|---|---|---|---|
Spns2 Spns2tm1a(KOMP)Wtsi |
HOM | Early adult | corneal opacity | cornea opacity Slit Lamp |
WTSI EuroPhenome |
1.34×10-21 | |
Dsc2 Dsc2tm1e(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
2.07×10-15 | |
Kctd1 Kctd1em1(IMPC)J |
HOM | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
3.47×10-14 | |
Barx2 Barx2tm1b(EUCOMM)Hmgu |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
5.47×10-14 | |
Myo10 Myo10tm2(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
5.30×10-13 | |
Pitx2 Pitx2tm1b(EUCOMM)Wtsi |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
1.65×10-12 | |
Pld4 Pld4em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
6.50×10-12 | |
Setd6 Setd6tm1.1(KOMP)Mbp |
HOM | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
7.57×10-12 | |
Fam20a Fam20atm1b(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
2.60×10-11 | |
Fbn2 Fbn2em1(IMPC)Rbrc |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
RBRC IMPC |
3.49×10-11 | |
Spns2 Spns2tm1b(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
5.05×10-11 | |
Rab39b Rab39bem1(IMPC)Tcp |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
6.80×10-11 | |
Fgf10 Fgf10tm1b(EUCOMM)Wtsi |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
6.88×10-11 | |
Chsy1 Chsy1em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
4.33×10-10 | |
Acsl5 Acsl5tm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.87×10-09 | |
Agap1 Agap1tm1a(EUCOMM)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
6.84×10-09 | |
Ptma Ptmatm1.1(KOMP)Vlcg |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.20×10-08 | |
Pax6 Pax6em1(IMPC)Mbp |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.54×10-08 | |
Shroom4 Shroom4tm1.1(NCOM)Mfgc |
HEM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
6.77×10-08 | |
Trim33 Trim33em1(IMPC)Tcp |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
7.73×10-08 | |
Aspa Aspatm1b(EUCOMM)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
HMGU IMPC |
1.32×10-07 | |
Diaph3 Diaph3tm1b(KOMP)Mbp |
HET | Late adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
1.81×10-07 | |
Rab39b Rab39bem1(IMPC)Tcp |
HEM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
2.13×10-07 | |
Galnt9 Galnt9em1(IMPC)H |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
3.59×10-07 | |
Tnfrsf11b Tnfrsf11bem1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
6.15×10-07 | |
Tenm4 Tenm4em1(IMPC)Tcp |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
9.65×10-07 | |
Rnf168 Rnf168em1(IMPC)H |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
9.82×10-07 | |
Slc26a9 Slc26a9em1(IMPC)Mbp |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.16×10-06 | |
Diaph3 Diaph3tm1b(KOMP)Mbp |
HET | Late adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
1.33×10-06 | |
Krt80 Krt80em1(IMPC)J |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
1.55×10-06 | |
Elk4 Elk4tm1a(EUCOMM)Wtsi |
HOM | Early adult | corneal opacity | Cornea opacity Slit Lamp |
MRC Harwell EuroPhenome |
1.72×10-06 | |
Camsap3 Camsap3tm1a(EUCOMM)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
1.75×10-06 | |
Gabra2 Gabra2em1(IMPC)H |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
1.93×10-06 | |
Lama4 Lama4tm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
2.75×10-06 | |
Tmco1 Tmco1em1(IMPC)J |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
3.05×10-06 | |
Kat14 Kat14tm1a(KOMP)Wtsi |
HOM | Early adult | corneal opacity | cornea opacity Slit Lamp |
WTSI EuroPhenome |
3.20×10-06 | |
Pcsk6 Pcsk6em1(IMPC)J |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
3.51×10-06 | |
Rbm25 Rbm25em1(IMPC)J |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
3.97×10-06 | |
Foxe3 Foxe3em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
4.14×10-06 | |
Gpc4 Gpc4tm2b(EUCOMM)Wtsi |
HEM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
4.33×10-06 | |
Pcdh18 Pcdh18tm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
4.40×10-06 | |
Hip1 Hip1em1(IMPC)Hmgu |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
HMGU IMPC |
4.57×10-06 | |
Atp8b1 Atp8b1em1(IMPC)Tcp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
5.86×10-06 | |
Elmo3 Elmo3tm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
6.51×10-06 | |
Nadsyn1 Nadsyn1tm1b(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
7.42×10-06 | |
Crtc3 Crtc3tm1b(KOMP)Wtsi |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
7.45×10-06 | |
Ahsg Ahsgtm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
8.36×10-06 | |
Eef1d Eef1dem1(IMPC)Mbp |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
8.45×10-06 | |
Top2a Top2aem2(IMPC)Tcp |
HET | Late adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
8.94×10-06 | |
Clec5a Clec5aem1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.09×10-05 | |
Ehmt1 Ehmt1tm1b(EUCOMM)Hmgu |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MARC IMPC |
1.09×10-05 | |
Zzz3 Zzz3tm1a(EUCOMM)Wtsi |
HET | Early adult | corneal opacity | cornea opacity Slit Lamp |
WTSI MGP |
1.10×10-05 | |
Sdc1 Sdc1em1(IMPC)H |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
1.22×10-05 | |
Vwa5a Vwa5aem1(IMPC)J |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
1.23×10-05 | |
Id3 Id3em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.29×10-05 | |
Ngp Ngptm1b(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
BCM IMPC |
1.33×10-05 | |
Psmg1 Psmg1tm1b(KOMP)Wtsi |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
BCM IMPC |
1.37×10-05 | |
Sox21 Sox21em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
1.42×10-05 | |
Aurka Aurkatm1b(EUCOMM)Hmgu |
HET | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
1.43×10-05 | |
E2f3 E2f3tm1b(KOMP)Wtsi |
HET | Late adult | corneal opacity | Corneal opacity Eye Morphology |
KMPC IMPC |
1.45×10-05 | |
Parl Parltm1a(EUCOMM)Hmgu |
HET | Early adult | corneal opacity | Cornea opacity Slit Lamp |
MRC Harwell EuroPhenome |
1.76×10-05 | |
Sprr1a Sprr1aem1(IMPC)J |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
1.88×10-05 | |
Rad54l Rad54lem1Murr |
HET | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
1.99×10-05 | |
Pus1 Pus1em1(IMPC)J |
HOM | Late adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
2.42×10-05 | |
Stat4 Stat4em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
2.43×10-05 | |
Celsr1 Celsr1Crsh |
HET | Early adult | corneal opacity | Cornea opacity Slit Lamp |
MRC Harwell EuroPhenome |
2.56×10-05 | |
Bri3 Bri3em1(IMPC)Bay |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
BCM IMPC |
2.65×10-05 | |
Pfn1 Pfn1tm1a(EUCOMM)Wtsi |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
2.82×10-05 | |
Esyt1 Esyt1em1(IMPC)Hmgu |
HOM | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
HMGU IMPC |
2.83×10-05 | |
Asxl1 Asxl1tm1a(EUCOMM)Wtsi |
HET | Early adult | corneal opacity | cornea opacity Slit Lamp |
WTSI MGP |
2.83×10-05 | |
Pigh Pightm1.1(KOMP)Vlcg |
HET | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
2.84×10-05 | |
Gmppa Gmppaem1(IMPC)Tcp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
TCP IMPC |
3.04×10-05 | |
Scamp2 Scamp2em1(IMPC)J |
HOM | Late adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
3.31×10-05 | |
Rab36 Rab36tm1b(KOMP)Wtsi |
HOM | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
3.37×10-05 | |
Zbtb16 Zbtb16em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
3.39×10-05 | |
Cidea Cideatm1b(EUCOMM)Hmgu |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
ICS IMPC |
3.44×10-05 | |
Ceacam16 Ceacam16tm1.1(KOMP)Wtsi |
HOM | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
3.53×10-05 | |
Stra6l Stra6ltm1b(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
3.67×10-05 | |
Rab19 Rab19tm1b(EUCOMM)Hmgu |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
ICS IMPC |
3.98×10-05 | |
Ric8b Ric8btm1b(EUCOMM)Hmgu |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
4.00×10-05 | |
Zdhhc23 Zdhhc23tm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
4.06×10-05 | |
Trim39 Trim39tm1b(EUCOMM)Hmgu |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
4.16×10-05 | |
Foxo3 Foxo3tm1.1(KOMP)Vlcg |
HOM | Early adult | sclerocornea | Corneal Sclerization Eye Morphology |
JAX IMPC |
4.70×10-05 | |
Slbp Slbptm1.1(KOMP)Vlcg |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
4.89×10-05 | |
Spry4 Spry4tm1b(KOMP)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
KMPC IMPC |
5.10×10-05 | |
Fancf Fancfem1(IMPC)J |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
5.22×10-05 | |
Trim2 Trim2em1(IMPC)Bay |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
BCM IMPC |
5.40×10-05 | |
Itpr3 Itpr3em1(IMPC)Mbp |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
5.67×10-05 | |
U2af1 U2af1em1(IMPC)J |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
JAX IMPC |
5.83×10-05 | |
Klhdc2 Klhdc2tm1a(EUCOMM)Hmgu |
HET | Early adult | corneal opacity | Cornea opacity Slit Lamp |
MRC Harwell EuroPhenome |
5.90×10-05 | |
Hbs1l Hbs1ltm1a(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
WTSI IMPC |
6.25×10-05 | |
Ctbp2 Ctbp2em1(IMPC)Bay |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
BCM IMPC |
7.09×10-05 | |
Ccdc178 Ccdc178tm1b(EUCOMM)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
BCM IMPC |
7.11×10-05 | |
Fgf20 Fgf20em1(IMPC)Ccpcz |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
CCP-IMG IMPC |
7.50×10-05 | |
Tcf7l1 Tcf7l1tm1a(EUCOMM)Wtsi |
HET | Early adult | corneal opacity | cornea opacity Slit Lamp |
WTSI MGP |
8.15×10-05 | |
Thpo Thpotm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
8.37×10-05 | |
Nmral1 Nmral1tm1.1(KOMP)Vlcg |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
8.61×10-05 | |
Fkbp5 Fkbp5tm1b(KOMP)Wtsi |
HOM | Early adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
8.63×10-05 | |
Fsd2 Fsd2em1(IMPC)Mbp |
HOM | Late adult | corneal opacity | Corneal opacity Eye Morphology |
UC Davis IMPC |
8.89×10-05 | |
Trpm7 Trpm7tm1b(KOMP)Wtsi |
HET | Early adult | corneal opacity | Corneal opacity Eye Morphology |
MRC Harwell IMPC |
9.41×10-05 |