Validation API Changelog Feed - IMPC | International Mouse Phenotyping Consortium https://www.mousephenotype.org/phenodcc/validation-api-changelog/validation-feed/ Generating a complete functional catalogue of the mouse genome Tue, 07 Apr 2026 10:07:57 +0000 en hourly 1 https://wordpress.org/?v=6.9.4 https://www.mousephenotype.org/wp-content/uploads/2022/04/favicon-196x196-1-150x150.png Validation Feed | IMPC | International Mouse Phenotyping Consortium https://www.mousephenotype.org/phenodcc/validation-api-changelog/validation-feed/ 32 32 New release: January 1, 1970 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 01 Jan 70 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+01+Jan+70+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Internal code improvements for procedures and specimen processing

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]]> New release: May 14, 2021 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Fri, 14 May 21 12:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Fri%2C+14+May+21+12%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Returning phenotyping errors as warnings for baseline specimens

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]]> New release: April 29, 2021 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 29 Apr 21 17:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+29+Apr+21+17%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Added validation in case of issue of fetched information from Gentar

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]]> New release: April 19, 2021 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Mon, 19 Apr 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Mon%2C+19+Apr+21+19%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Added validation for protecting finalised baselines submission.

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]]> New release: April 15, 2021 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 15 Apr 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+15+Apr+21+19%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Updated logic for processing any new body weight procedure/parameter

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Failing legacy and specialist pipeline submissions at validation

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Error messages include GenTaR for removing confusion from warnings/errors

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]]> New release: April 12, 2021 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Mon, 12 Apr 21 12:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Mon%2C+12+Apr+21+12%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Centralised and simplified management of centre information across our databases

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]]> New release: February 17, 2021 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Wed, 17 Feb 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Wed%2C+17+Feb+21+19%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Added validation for incorrect phenotyping and production centre in xml

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]]> New release: December 15, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Tue, 15 Dec 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Tue%2C+15+Dec+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Reverted patch of 20/11/2020 as issues were discovered and stopping centers from submitting procedures with different Phenotyping centre and submitted XML center ID for colony

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Additions/ New Features

No features added in this update
]]> New release: November 24, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Tue, 24 Nov 20 14:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Tue%2C+24+Nov+20+14%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Changes to processing of late adult validation for colonies in iMITS to account for colonies not yet in Gentar

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Additions/ New Features

No features added in this update
]]> New release: November 20, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Fri, 20 Nov 20 15:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Fri%2C+20+Nov+20+15%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Prohibit further data submission for colony with all_data_sent flag is set to true on iMITS.

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Phenotyping centre and submitted XML center ID should be same for colony

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]]> New release: November 16, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Mon, 16 Nov 20 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Mon%2C+16+Nov+20+19%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Status coded experiments should not be validated against the phenotyping repositories.

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Late adult pipeline experiments will now be validated against late-adult phenotyping stages, and will fail if the stage is not present or doesn't have the correct status.

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Additions/ New Features

No features added in this update
]]> New release: October 26, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Mon, 26 Oct 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Mon%2C+26+Oct+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Fixing issue that would prevent the validator to query GenTaR for less than 25 colonies

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Fixing potential null pointer exception when the validator is unable to retrieve any phenotyping information from the phenotyping repositories (iMits/GenTaR)

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Additions/ New Features

No features added in this update
]]> New release: October 23, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Fri, 23 Oct 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Fri%2C+23+Oct+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Bug fixing release for v2020.10.20: No GenTaR credentials are needed

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Additions/ New Features

No features added in this update
]]> New release: October 20, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Tue, 20 Oct 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Tue%2C+20+Oct+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

XSD: min of 1 procedure per experiment (effectively experiments cannot be submitted without a procedure)

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iMits/GenTaR production centre is validated against XSD CentreILARcode (ignoring case)

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  • Early Adult procedures will be validated against the EA stage of the plan of their specimen
  • Late Adult procedures will be validated against the LA stage of the plan of their specimen
  • Specimens and line procedures will need to have a Plan with at least one valid EA or LA stage or both
  • The plan for each entity is matched using its colony, for experiments that is their specimen’s colony
  • Valid stages for data submission: [“Phenotyping Registered", "Rederivation Complete", "Phenotyping Started”]

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]]> New release: July 6, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Mon, 06 Jul 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Mon%2C+06+Jul+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Removing validation warnings related to the project field

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Adding xml logs for value out of bounds exceptions (1024 characters for simple parameters, 255 for all other values/increment values/URLs)

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]]> New release: April 17, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Fri, 17 Apr 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Fri%2C+17+Apr+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Fixing missing error logs for date-time validation failures

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Additions/ New Features

No features added in this update
]]> New release: March 24, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Tue, 24 Mar 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Tue%2C+24+Mar+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Calorimetry procedures: all Simple Parameters of type DATETIME and all Series Parameters increments of type datetime will be validated against ISO 8601 standard (accepted formats are YYYY-MM-DDThh:mm:ss+00:00 and YYYY-MM-DDThh:mm:ssZ)

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]]> New release: February 27, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 27 Feb 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+27+Feb+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Oldest valid specimen date of birth moving from DOB > 2010-01-01 to DOB > 2007-01-01

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Error message "colonyID '%s' for specimen '%s' is not defined in iMits" replaced by "Did not find genotype confirmed, active colony '%s' on iMits with status other than rederivation started for specimen '%s'"

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]]> New release: February 10, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Mon, 10 Feb 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Mon%2C+10+Feb+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Adding new endpoint /validation/strains/list, returns all DCC acceptable strains

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]]> New release: January 30, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 30 Jan 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+30+Jan+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Currently if a centre submits an optional parameter with a blank value/empty string etc. Validation treats it as a null value. A warning is given, but it is accepted.
Going forward, if the tag exists for an optional parameter, it will be validated as any other parameter would be, so blank/empty values will be failed.
If you do not intend to submit an optional parameter, the tag must be omitted from the XML. This new validation rule will be enforced on the crawler from 27th Feb 2020. See crawler roadmap for further details.

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Additions/ New Features

No features added in this update
]]> New release: January 16, 2020 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 16 Jan 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+16+Jan+20+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Improving empty string detection

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]]> New release: November 5, 2019 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Tue, 05 Nov 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Tue%2C+05+Nov+19+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Fixing incorrect invalidation of production centre by switching to iMits "cohort_production_centre_name" instead of "production_centre_name"

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Additions/ New Features

No features added in this update
]]> New release: October 25, 2019 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Fri, 25 Oct 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Fri%2C+25+Oct+19+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Adding check for preventing procedures with multiply defined Series Media Parameter Values to pass validation

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]]> New release: October 24, 2019 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Thu, 24 Oct 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Thu%2C+24+Oct+19+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Fixing validation rule that would incorrectly invalidate a specimen when its strain was correct both in imits and in the xml

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Additions/ New Features

No features added in this update
]]> New release: October 22, 2019 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Tue, 22 Oct 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Tue%2C+22+Oct+19+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Fixing invalidation of status coded line procedures with unknown colony id. The colony will not be validated if a line procedure is status coded

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Additions/ New Features

Updated strain validation logic

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]]> New release: September 20, 2019 https://www.mousephenotype.org/phenodcc/validation-api-changelog/ Fri, 20 Sep 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3201?date=Fri%2C+20+Sep+19+00%3A00%3A00+%2B0000 Validation API Changelog Changes/ Bug Fixes

Fixed bug that would produce an exception when a line failed to validate its colony with imits

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Fixed bug that was causing multiple decelerations of the same simple parameter but with different sequence id to fail validation

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Introduced stability improvements

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Additions/ New Features

Re-introduced the integer type check for numerical values, the check had been merged with the floating point numbers check in previous releases

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