Crawler Changelog Feed - IMPC | International Mouse Phenotyping Consortium https://www.mousephenotype.org/phenodcc/crawler-changelog/crawler-feed/ Generating a complete functional catalogue of the mouse genome Tue, 07 Apr 2026 10:07:57 +0000 en hourly 1 https://wordpress.org/?v=6.9.4 https://www.mousephenotype.org/wp-content/uploads/2022/04/favicon-196x196-1-150x150.png Crawler Feed | IMPC | International Mouse Phenotyping Consortium https://www.mousephenotype.org/phenodcc/crawler-changelog/crawler-feed/ 32 32 New release: September 14, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 14 Sep 21 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+14+Sep+21+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Internal code improvements for procedures and specimen processing

Tags:

]]> New release: May 24, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 24 May 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+24+May+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Recalculation for BWT procedures in case of DOB changed

Tags:

Additions/ New Features

No features added in this update
]]> New release: May 14, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Fri, 14 May 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Fri%2C+14+May+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Tags:

Additions/ New Features

Returning phenotyping errors as warnings for baseline specimens

Tags:

Tags:

]]> New release: April 28, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Wed, 28 Apr 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Wed%2C+28+Apr+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Added validation in case of issue of fetched information from Gentar

Tags:

]]> New release: April 19, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 19 Apr 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+19+Apr+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Added validation for protecting finalised baselines submission

Tags:

]]> New release: April 15, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Thu, 15 Apr 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Thu%2C+15+Apr+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Updated logic for processing any new body weight procedure/parameter

Tags:

Failing legacy and specialist pipeline submissions at validation

Tags:

Error messages include GenTaR for removing confusion from warnings/errors

Tags:

]]> New release: April 12, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 12 Apr 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+12+Apr+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Centralised and simplified management of centre information across our databases

Tags:

]]> New release: February 19, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Fri, 19 Feb 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Fri%2C+19+Feb+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Processing of multiple colonies updated.

Tags:

]]> New release: February 17, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Wed, 17 Feb 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Wed%2C+17+Feb+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Added validation for incorrect phenotyping and production centre in xml

Tags:

]]> New release: February 15, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 15 Feb 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+15+Feb+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Updating the code to handle a colony when it is neither present with Gentar nor iMits

Tags:

Additions/ New Features

Updated genotype information handling at DCC end.

Tags:

]]> New release: February 2, 2021 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 02 Feb 21 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+02+Feb+21+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Validates embryo procedures submitted to adult specimens, or adult procedures to embryo specimens.

Tags:

Removed check for summary_status_name and attempt_type when fetching plans from Gentar.

Tags:

Added check for handling missing mandatory fields in Gentar.

Tags:

]]> New release: December 15, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 15 Dec 20 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+15+Dec+20+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Reverted patch of 19/11/2020 as issues were discovered and stopping centers from submitting procedures with different Phenotyping centre and submitted XML center ID for colony

Tags:

Additions/ New Features

No features added in this update
]]> New release: November 30, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 30 Nov 20 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+30+Nov+20+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

When a specimen is resubmitted with a changed DOB, all BWT increments for that animal will be recalculated.

Tags:

]]> New release: November 24, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 24 Nov 20 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+24+Nov+20+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Changes to processing of late adult validation for colonies in iMITS to account for colonies not yet in Gentar.

Tags:

Additions/ New Features

No features added in this update
]]> New release: November 19, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Thu, 19 Nov 20 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Thu%2C+19+Nov+20+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Prohibit further data submission for colony with all_data_sent flag is set to true on iMITS.

Tags:

Phenotyping centre and submitted XML center ID should be same for colony.

Tags:

]]> New release: November 16, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 16 Nov 20 19:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+16+Nov+20+19%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Status coded experiments should not be validated against the phenotyping repositories.

Tags:

Late adult pipeline experiments will now be validated against late-adult phenotyping stages, and will fail if the stage is not present or doesn't have the correct status.

Tags:

Fix for scenario when colony information is not found in Gentar/iMits for line procedures.

Tags:

Additions/ New Features

No features added in this update
]]> New release: October 23, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Fri, 23 Oct 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Fri%2C+23+Oct+20+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

XSD: min of 1 procedure per experiment (effectively experiments cannot be submitted without a procedure)

Tags:

iMits/GenTaR production centre is validated against XSD CentreILARcode (ignoring case)

Tags:

  • Early Adult procedures will be validated against the EA stage of the plan of their specimen
  • Late Adult procedures will be validated against the LA stage of the plan of their specimen
  • Specimens and line procedures will need to have a Plan with at least one valid EA or LA stage or both
  • The plan for each entity is matched using its colony, for experiments that is their specimen’s colony
  • Valid stages for data submission: [“Phenotyping Registered", "Rederivation Complete", "Phenotyping Started”]

Tags:

]]> New release: July 6, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Mon, 06 Jul 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Mon%2C+06+Jul+20+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Removing validation warnings related to the project field

Tags:

Adding xml logs for value out of bounds exceptions (1024 characters for simple parameters, 255 for all other values/increment values/URLs)

Tags:

]]> New release: April 17, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Fri, 17 Apr 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Fri%2C+17+Apr+20+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Fixing missing error logs for date-time validation failures

Tags:

Additions/ New Features

No features added in this update
]]> New release: March 24, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 24 Mar 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+24+Mar+20+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Calorimetry procedures: all Simple Parameters of type DATETIME and all Series Parameters increments of type datetime will be validated against ISO 8601 standard (accepted formats are YYYY-MM-DDThh:mm:ss+00:00 and YYYY-MM-DDThh:mm:ssZ)

Tags:

]]> New release: February 27, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Thu, 27 Feb 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Thu%2C+27+Feb+20+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes
No fixes added in this update

Additions/ New Features

Optional parameters without a value are now considered invalid

Tags:

Oldest valid specimen date of birth moving from DOB > 2010-01-01 to DOB > 2007-01-01

Tags:

Error message "colonyID '%s' for specimen '%s' is not defined in iMits" replaced by "Did not find genotype confirmed, active colony '%s' on iMits with status other than rederivation started for specimen '%s'"

Tags:

]]> New release: January 16, 2020 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Thu, 16 Jan 20 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Thu%2C+16+Jan+20+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Fixing duplicate submissions causing updates instead of being discarded

Tags:

Fixing specimen submissions with modified production centre did not trigger an update

Tags:

Additions/ New Features

Adding unzip failed phase and status for zips

Tags:

Improving empty string detection in validation

Tags:

]]> New release: November 5, 2019 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 05 Nov 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+05+Nov+19+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Fixing incorrect invalidation of production centre by switching to iMits "cohort_production_centre_name" instead of "production_centre_name"

Tags:

Additions/ New Features

No features added in this update
]]> New release: October 25, 2019 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Fri, 25 Oct 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Fri%2C+25+Oct+19+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Fixing data failing Overviews because of missing check in validation related to Series Media Paraemter Values

Tags:

Additions/ New Features

Adding check for preventing procedures with multiply defined Series Media Parameter Values to pass validation

Tags:

]]> New release: October 24, 2019 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Thu, 24 Oct 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Thu%2C+24+Oct+19+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Fixing validation rule that would incorrectly invalidate a specimen when its strain was correct both in imits and in the xml

Tags:

Additions/ New Features

No features added in this update
]]> New release: October 22, 2019 https://www.mousephenotype.org/phenodcc/crawler-changelog/ Tue, 22 Oct 19 00:00:00 +0000 https://www.mousephenotype.org/?page_id=3374?date=Tue%2C+22+Oct+19+00%3A00%3A00+%2B0000 Crawler Changelog Changes/ Bug Fixes

Fixing invalidation of status coded line procedures with unknown colony id. The colony will not be validated if a line procedure is status coded.

Tags:

Additions/ New Features

Updated strain validation logic

Tags:

]]>