Welcome

Welcome to the IKMC Targeting Repository. This repository compiles information on mutant ES Cells and Targeting vectors made by the pipelines in the International Knockout Mouse Consortium (IKMC).

Please note: This site is provided to enable IKMC members to enter product data. To browse this data you should use the IKMC Biomart Portal at knockoutmouse.org.

About

Catalogue

This repository is a catalogue of targeted mutant alleles produced by the IKMC members and the mirKO program.

Allele Maps

All alleles stored in this repository will have allele map images generated based on the molecular structure information supplied. Examples of such images can be seen here and here. Note: this functionality is still in active development.

Genome Browser Track

All alleles in this repository will appear in the IKMC DAS Track, see here for an example (the gene Art4). (See wikipedia for information on the DAS specification.) This track can be included into any DAS-aware genome browser (in particular the Ensembl genome browser).

Summary

This repository currently houses information on 40950 alleles, covering 24006 mouse genes, that have been made into 157009 targeting vectors and 244982 mutant ES cells, over 13 different production pipelines.

Genes Alleles Vectors ES Cells
EUCOMM 8691 17092 68848 108460
EUCOMM GT 12 12 9 12
EUCOMMTools 2768 4212 17484 29492
EUCOMMToolsCre 456 756 6414 4476
GENCODYS 9 9 1 9
KOMP-CSD 6910 13581 57330 80185
KOMP-Regeneron 4134 4137 4135 16567
NARLabs 51 51 51 140
NorCOMM 594 609 609 3254
SANGER_FACULTY 0 0 0 0
Sanger MGP 87 187 1817 755
TIGM 1 1 0 1
mirKO 293 303 311 1631