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Previous IMPC Data Release 10.0 Notes

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IMPC

  • Release: 10.0
  • Published: 27 March 2019

Statistical Package

  • PhenStat
  • Version: 2.14.1

Genome Assembly

  • Mus musculus
  • Version: GRCm38

Summary

  • Number of phenotyped genes: 5,861
  • Number of phenotyped mutant lines: 6,255
  • Number of phenotype calls: 69,982

Data access

Highlights

Data release 10.0

Release notes: Represents a major data release. Changes include:
  • A significant increase in Acoustic Startle procedure data
  • About 30,000 missing images due to image file corruption

Data Reports

Lines and Specimens

Phenotyping Center Mutant Lines Baseline Mice Mutant Mice
JAX 1,226 8,413 35,252
TCP 546 7,104 24,892
HMGU 311 3,173 5,770
KMPC 43 869 1,067
MARC 232 1,877 3,776
MRC Harwell 596 5,893 15,626
RBRC 96 2,023 1,859
ICS 223 2,325 3,554
WTSI 1,329 4,540 21,316
BCM 597 4,572 17,476
UC Davis 1,056 4,156 23,749

Experimental Data and Quality Checks

Data Type QC passed QC failed issues
categorical 14,917,863 3,835 * 16,974 *
unidimensional 11,068,097 43,508 * 293,835 *
time series 13,444,019 2,615 * 11 *
text 192,176 11,124 * 45,751
image record 469,960 0 0

* Excluded from statistical analysis.

Distribution of Phenotype Annotations

Status

Overall

By Center

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More charts and status information are available from iMits.

Phenotype Associations

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Trends




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Previous Releases

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