Histopathology data for Rims3

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #3 Spinal cord [MA:0000216] 0 0
HOM M #4 Skeletal muscle [MA:0003148] 0 0
HOM M #4 Epididymis [MA:0000397] 0 0
HOM M #3 Stomach [MA:0000353] 0 0
HOM F #2 Sciatic nerve [MA:0001172] 0 0
HOM F #1 Eye [MA:0000261] 0 0
HOM M #4 Uterus [MA:0000389] Not applicable
HOM M #3 Lymph node [MA:0000139] 0 0
HOM M #4 Gall bladder [MA:0000356] 0 0
HOM F #2 Adrenal gland [MA:0000116] 0 0
HOM F #2 Testis [MA:0000411] Not applicable
HOM F #2 Thymus [MA:0000142] 0 0
HOM M #4 Ovary [MA:0000384] Not applicable
HOM F #1 Prostate gland [MA:0000404] Not applicable
HOM M #3 Ovary [MA:0000384] Not applicable
HOM M #4 Stomach [MA:0000353] 0 0
HOM M #3 Heart [MA:0000072] 0 0
HOM F #2 Skin [MA:0000151] 0 0
HOM F #2 Mammary gland [MA:0000145] 0 0
HOM F #2 Bone marrow [MA:0000134] 0 0
HOM F #1 Heart [MA:0000072] 0 0
HOM M #4 Trachea [MA:0000441] 0 0
HOM F #1 Femur [MA:0001359] 0 0
HOM F #1 Salivary gland [MA:0000346] 0 0
HOM M #4 Esophagus [MA:0000352] 0 0
HOM M #3 Uterus [MA:0000389] Not applicable
HOM F #2 Liver [MA:0000358] 0 0
HOM M #3 Femur [MA:0001359] 0 0
HOM M #3 Salivary gland [MA:0000346] 0 0
HOM F #1 Pancreas [MA:0000120] 0 0
HOM F #2 Thyroid 0 0
HOM F #2 Optic II nerve [MA:0001097] 0 0
HOM M #4 Kidney [MA:0000368] 0 0
HOM M #4 Thymus [MA:0000142] 0 0
HOM F #1 Mammary gland [MA:0000145] 0 0
HOM F #2 Seminal vesicle [MA:0000410] Not applicable
HOM F #1 Bone marrow [MA:0000134] 0 0
HOM M #3 Trachea [MA:0000441] 0 0
HOM F #2 Uterus [MA:0000389] 0 0
HOM M #3 Eye [MA:0000261] 0 0
HOM F #1 Spleen [MA:0000141] 0 0
HOM F #2 Esophagus [MA:0000352] 0 0
HOM M #4 Heart [MA:0000072] 0 0
HOM M #3 Esophagus [MA:0000352] 0 0
HOM F #1 Optic II nerve [MA:0001097] 0 0
HOM M #3 Prostate gland [MA:0000404] 0 0
HOM M #4 Sciatic nerve [MA:0001172] 0 0
HOM F #2 Eye [MA:0000261] 0 0
HOM F #1 Sciatic nerve [MA:0001172] 0 0
HOM F #2 Ovary [MA:0000384] 0 0
HOM F #1 Ovary [MA:0000384] 0 0
HOM F #2 Gall bladder [MA:0000356] 0 0
HOM M #3 Epididymis [MA:0000397] 0 0
HOM F #2 Brain [MA:0000168] 0 0
HOM F #1 Lung [MA:0000415] 0 0
HOM M #4 Bone marrow [MA:0000134] 0 0
HOM F #1 Thymus [MA:0000142] 0 0
HOM M #4 Mammary gland [MA:0000145] Not applicable
HOM M #3 Large intestine [MA:0000333] 0 0
HOM F #1 Skeletal muscle [MA:0003148] 0 0
HOM M #4 Liver [MA:0000358] 0 0
HOM M #4 Spleen [MA:0000141] 0 0
HOM M #4 Optic II nerve [MA:0001097] 0 0
HOM M #4 Thyroid 0 0
HOM M #3 Skin [MA:0000151] 0 0
HOM M #4 Brain [MA:0000168] 0 0
HOM F #2 Lung [MA:0000415] 0 0
HOM F #1 Gall bladder [MA:0000356] 0 0
HOM F #1 Small intestine [MA:0000337] 0 0
HOM M #4 Small intestine [MA:0000337] 0 0
HOM M #4 Seminal vesicle [MA:0000410] 0 0
HOM F #1 Seminal vesicle [MA:0000410] Not applicable
HOM M #3 Testis [MA:0000411] 0 0
HOM M #3 Adrenal gland [MA:0000116] 0 0
HOM F #1 Liver [MA:0000358] 0 0
HOM M #3 Mammary gland [MA:0000145] Not applicable
HOM M #3 Urinary bladder [MA:0000380] 0 0
HOM F #1 Trachea [MA:0000441] 0 0
HOM M #3 Sciatic nerve [MA:0001172] 0 0
HOM M #3 Bone marrow [MA:0000134] 0 0
HOM F #1 Thyroid 0 0
HOM F #1 Brain [MA:0000168] 0 0
HOM F #2 Heart [MA:0000072] 0 0
HOM M #4 Lung [MA:0000415] 0 0
HOM F #2 Large intestine [MA:0000333] 0 0
HOM F #2 Spinal cord [MA:0000216] 0 0
HOM M #4 Skin [MA:0000151] 0 0
HOM M #3 Lung [MA:0000415] 0 0
HOM M #4 Prostate gland [MA:0000404] 0 0
HOM M #3 Pancreas [MA:0000120] 0 0
HOM M #4 Eye [MA:0000261] 0 0
HOM F #2 Small intestine [MA:0000337] 0 0
HOM F #1 Uterus [MA:0000389] 0 0
HOM F #2 Skeletal muscle [MA:0003148] 0 0
HOM F #2 Spleen [MA:0000141] 0 0
HOM F #1 Esophagus [MA:0000352] 0 0
HOM F #1 Kidney [MA:0000368] 0 0
HOM M #4 Testis [MA:0000411] 0 0
HOM F #1 Testis [MA:0000411] Not applicable
HOM F #2 Lymph node [MA:0000139] 0 0
HOM M #4 Pancreas [MA:0000120] 0 0
HOM M #3 Kidney [MA:0000368] 0 0
HOM F #1 Stomach [MA:0000353] 1 0 localized subacute Gastritis, subacute.
HOM F #2 Prostate gland [MA:0000404] Not applicable
HOM M #3 Brain [MA:0000168] 0 0
HOM M #4 Large intestine [MA:0000333] 0 0
HOM F #1 Spinal cord [MA:0000216] 0 0
HOM F #1 Adrenal gland [MA:0000116] 0 0
HOM M #4 Femur [MA:0001359] 0 0
HOM M #4 Salivary gland [MA:0000346] 0 0
HOM M #3 Liver [MA:0000358] 0 0
HOM F #2 Kidney [MA:0000368] 0 0
HOM M #4 Urinary bladder [MA:0000380] 0 0
HOM F #1 Urinary bladder [MA:0000380] 0 0
HOM F #1 Skin [MA:0000151] 0 0
HOM F #2 Pancreas [MA:0000120] 0 0
HOM M #4 Lymph node [MA:0000139] 0 0
HOM F #1 Lymph node [MA:0000139] 0 0
HOM M #3 Gall bladder [MA:0000356] 0 0
HOM F #2 Epididymis [MA:0000397] Not applicable
HOM F #1 Epididymis [MA:0000397] Not applicable
HOM M #4 Spinal cord [MA:0000216] 0 0
HOM M #3 Small intestine [MA:0000337] 0 0
HOM M #3 Thymus [MA:0000142] 0 0
HOM F #1 Large intestine [MA:0000333] 0 0
HOM F #2 Stomach [MA:0000353] 0 0
HOM M #3 Skeletal muscle [MA:0003148] 0 0
HOM M #4 Adrenal gland [MA:0000116] 0 0
HOM M #3 Seminal vesicle [MA:0000410] 0 0
HOM F #2 Trachea [MA:0000441] 0 0
HOM M #3 Thyroid 0 0
HOM M #3 Optic II nerve [MA:0001097] 0 0
HOM M #3 Spleen [MA:0000141] 0 0
HOM F #2 Urinary bladder [MA:0000380] 0 0
HOM F #2 Salivary gland [MA:0000346] 0 0
HOM F #2 Femur [MA:0001359] 0 0

Associated histopathology images

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