Histopathology data for Phactr1

Score Definitions

Severity Score:

  • 0 = Normal,
  • 1 = Mild (observation barely perceptible and not believed to have clinical significance),
  • 2 = Moderate (observation visible but involves minor proportion of tissue and clinical consequences of observation are most likely subclinical),
  • 3 = Marked (observation clearly visible involves a significant proportion of tissue and is likely to have some clinical manifestations generally expected to be minor),
  • 4 = Severe (observation clearly visible involves a major proportion of tissue and clinical manifestations are likely associated with significant tissue dysfunction or damage)

Significance Score:

  • 0 = Not significant: Interpreted by the histopathologist to be a finding attributable to background strain (e.g. low-incidence hydrocephalus, microphthalmia) or incidental to mutant phenotype (e.g. hair-induced glossitis, focal hyperplasia, mild mononuclear cell infiltrate).
  • 1 = Significant: Interpreted by the histopathologist as a finding not attributable to background strain and not incidental to mutant phenotype.


Zyg Sex Mouse Tissue MPATH Process Term Severity Score Significance Score MPATH Diagnostic PATO Descriptor Free Text Images
HOM M #4 Thymus [MA:0000142]
HOM M #6 Trachea [MA:0000441]
HOM M #5 Tongue [MA:0000347]
HOM F #7 Tooth [MA:0000348]
HOM M #4 Ear [MA:0000236]
HOM F #7 Salivary gland [MA:0000346] 2 0 perivascular lymphocytic infiltrates
HOM M #1 Thyroid
HOM F #7 Femur [MA:0001359]
HOM M #6 Bone marrow [MA:0000134]
HOM M #1 Sciatic nerve [MA:0001172]
HOM M #4 Knee joint [MA:0000471]
HOM F #3 Trigeminal V ganglion [MA:0001080]
HOM M #5 Lung [MA:0000415]
HOM F #3 Heart [MA:0000072]
HOM F #8 Eye [MA:0000261]
HOM F #9 Eye [MA:0000261] 1 0 minimal superficial cortical cataracts
HOM M #5 Gall bladder [MA:0000356]
HOM M #1 Spleen [MA:0000141]
HOM M #4 Lymph node [MA:0000139]
HOM M #5 Testis [MA:0000411]
HOM F #3 Stomach [MA:0000353] 1 0 Epithelial hyalinosis at the limiting ridge
HOM F #7 Brown adipose tissue [MA:0000057]
HOM M #6 Skeletal muscle [MA:0003148]
HOM F #8 Trigeminal V ganglion [MA:0001080]
HOM M #5 Nasal cavity [MA:0000284]
HOM M #4 Tibia [MA:0001361]
HOM F #3 Esophagus [MA:0000352]
HOM F #2 Salivary gland [MA:0000346]
HOM F #8 Stomach [MA:0000353]
HOM F #2 Pancreas [MA:0000120]
HOM M #6 Spleen [MA:0000141]
HOM M #1 Adrenal gland [MA:0000116]
HOM F #8 Sciatic nerve [MA:0001172]
HOM F #2 Urinary bladder [MA:0000380]
HOM F #8 Thyroid
HOM M #4 Sternum [MA:0001331]
HOM F #2 Large intestine [MA:0000333]
HOM M #5 Spinal cord [MA:0000216]
HOM M #6 Adrenal gland [MA:0000116]
HOM F #8 Adrenal gland [MA:0000116]
HOM M #5 Epididymis [MA:0000397]
HOM M #1 Prostate gland [MA:0000404]
HOM F #3 Thyroid
HOM M #6 Eye [MA:0000261]
HOM M #4 Testis [MA:0000411]
HOM M #4 Gall bladder [MA:0000356]
HOM M #6 Sciatic nerve [MA:0001172]
HOM M #1 Skeletal muscle [MA:0003148]
HOM F #3 Spleen [MA:0000141]
HOM F #2 Femur [MA:0001359]
HOM M #5 Sternum [MA:0001331] 1 0 Intersternabrae disc degeneration
HOM F #8 Esophagus [MA:0000352]
HOM M #1 Bone [MA:0001459]
HOM F #3 Kidney [MA:0000368] 1 0 chronic nephropathy with tubular basophilia, multifocal glomerular mesangial thickeneing and interstitial nephritis
HOM F #8 Bone marrow [MA:0000134]
HOM F #2 Tooth [MA:0000348]
HOM F #2 Brown adipose tissue [MA:0000057]
HOM F #3 Uterus [MA:0000389] 1 0 cystic endometrial hyperplasia
HOM F #8 Heart [MA:0000072]
HOM F #7 Bone marrow [MA:0000134] 1 0 metaphyseal steatosis
HOM M #6 Brown adipose tissue [MA:0000057]
HOM M #1 Trachea [MA:0000441]
HOM F #8 Tibia [MA:0001361]
HOM F #3 Mammary gland [MA:0000145]
HOM F #3 Liver [MA:0000358] 1 0 Perivascular lymphocytic infiltrates
HOM M #6 Tooth [MA:0000348]
HOM M #1 Kidney [MA:0000368]
HOM M #4 Stomach [MA:0000353] 2 0 Gastric squamous mucosal hyperplasia and glandular mucosal epithelial hyalinosis
HOM F #3 Brain [MA:0000168]
HOM F #3 Skin [MA:0000151]
HOM F #3 Skeletal muscle [MA:0003148]
HOM M #5 Tibia [MA:0001361]
HOM M #6 Stomach [MA:0000353]
HOM F #2 Trachea [MA:0000441]
HOM F #2 Skeletal muscle [MA:0003148]
HOM F #2 Lymph node [MA:0000139]
HOM F #7 Gall bladder [MA:0000356]
HOM F #7 Thyroid
HOM F #7 Adrenal gland [MA:0000116]
HOM M #5 Brain [MA:0000168]
HOM M #5 Skin [MA:0000151]
HOM M #6 Liver [MA:0000358]
HOM M #6 Urinary bladder [MA:0000380]
HOM M #5 Tooth [MA:0000348]
HOM F #3 Trachea [MA:0000441]
HOM F #3 Knee joint [MA:0000471]
HOM M #1 Small intestine [MA:0000337]
HOM F #3 Ear [MA:0000236]
HOM F #3 Lymph node [MA:0000139]
HOM F #2 Adrenal gland [MA:0000116]
HOM M #1 Esophagus [MA:0000352]
HOM M #4 Esophagus [MA:0000352]
HOM M #5 Bone [MA:0001459]
HOM F #2 Gall bladder [MA:0000356]
HOM F #8 Lymph node [MA:0000139]
HOM F #8 Trachea [MA:0000441]
HOM F #8 Knee joint [MA:0000471]
HOM M #5 Knee joint [MA:0000471] 2 0 Articular cartilage degeneration and fibrillation with synovial hyperplasia
HOM F #3 Bone [MA:0001459]
HOM M #4 Trigeminal V ganglion [MA:0001080]
HOM M #6 Trigeminal V ganglion [MA:0001080]
HOM M #4 Heart [MA:0000072]
HOM M #1 Heart [MA:0000072]
HOM M #6 Femur [MA:0001359]
HOM M #5 Lymph node [MA:0000139] 1 0 Lymphoma
HOM F #8 Bone [MA:0001459]
HOM M #1 Salivary gland [MA:0000346]
HOM M #6 Heart [MA:0000072]
HOM M #6 Esophagus [MA:0000352]
HOM M #1 Trigeminal V ganglion [MA:0001080]
HOM F #3 Gall bladder [MA:0000356]
HOM M #5 Skeletal muscle [MA:0003148]
HOM M #5 Trachea [MA:0000441]
HOM M #4 Femur [MA:0001359]
HOM M #4 Thyroid
HOM M #5 Urinary bladder [MA:0000380]
HOM F #7 Bone [MA:0001459]
HOM M #4 Skin [MA:0000151]
HOM F #2 Brain [MA:0000168]
HOM F #2 Tongue [MA:0000347]
HOM F #8 Femur [MA:0001359]
HOM F #2 Skin [MA:0000151]
HOM F #3 Sciatic nerve [MA:0001172]
HOM M #6 Skin [MA:0000151]
HOM M #4 Liver [MA:0000358]
HOM F #7 Knee joint [MA:0000471]
HOM M #6 Thyroid
HOM F #3 Adrenal gland [MA:0000116]
HOM F #7 Lymph node [MA:0000139]
HOM M #6 Bone [MA:0001459]
HOM F #3 Brown adipose tissue [MA:0000057]
HOM M #6 Brain [MA:0000168]
HOM F #8 Brain [MA:0000168]
HOM M #4 Urinary bladder [MA:0000380]
HOM F #7 Trachea [MA:0000441]
HOM M #4 Tongue [MA:0000347]
HOM F #2 Bone [MA:0001459]
HOM F #7 Tongue [MA:0000347]
HOM F #7 Brain [MA:0000168]
HOM F #7 Urinary bladder [MA:0000380]
HOM M #5 Liver [MA:0000358]
HOM M #4 Brain [MA:0000168] 1 0 mild hydrocephalus
HOM F #2 Thyroid
HOM M #4 Trachea [MA:0000441]
HOM M #4 Skeletal muscle [MA:0003148]
HOM F #8 Skeletal muscle [MA:0003148]
HOM F #8 Skin [MA:0000151]
HOM M #1 Eye [MA:0000261]
HOM M #5 Femur [MA:0001359]
HOM M #1 Brown adipose tissue [MA:0000057]
HOM F #2 Knee joint [MA:0000471]
HOM M #6 Knee joint [MA:0000471]
HOM F #7 Skeletal muscle [MA:0003148]
HOM F #7 Skin [MA:0000151]
HOM F #8 Liver [MA:0000358]
HOM F #8 Urinary bladder [MA:0000380]
HOM M #6 Tongue [MA:0000347]
HOM F #3 Eye [MA:0000261]
HOM F #8 Nasal cavity [MA:0000284]
HOM M #1 Gall bladder [MA:0000356]
HOM F #3 Spinal cord [MA:0000216]
HOM F #2 Heart [MA:0000072]
HOM F #2 Esophagus [MA:0000352]
HOM M #6 Lymph node [MA:0000139]
HOM M #1 Testis [MA:0000411]
HOM F #8 Spinal cord [MA:0000216]
HOM F #2 Stomach [MA:0000353]
HOM F #7 Liver [MA:0000358] 1 0 perivascular lymphocytic infiltrates
HOM M #4 Bone [MA:0001459]
HOM F #2 Trigeminal V ganglion [MA:0001080]
HOM M #5 Eye [MA:0000261]
HOM M #4 Prostate gland [MA:0000404]
HOM F #8 Tongue [MA:0000347]
HOM M #6 Ear [MA:0000236]
HOM F #8 Lung [MA:0000415]
HOM F #7 Tibia [MA:0001361]
HOM M #5 Thyroid
HOM M #1 Large intestine [MA:0000333]
HOM F #7 Heart [MA:0000072]
HOM F #7 Esophagus [MA:0000352]
HOM F #7 Trigeminal V ganglion [MA:0001080]
HOM F #2 Liver [MA:0000358]
HOM M #1 Nasal cavity [MA:0000284]
HOM M #6 Sternum [MA:0001331]
HOM F #3 Nasal cavity [MA:0000284]
HOM M #5 Kidney [MA:0000368]
HOM M #5 Sciatic nerve [MA:0001172]
HOM M #1 Sternum [MA:0001331]
HOM M #4 Tooth [MA:0000348]
HOM M #1 Spinal cord [MA:0000216]
HOM M #6 Tibia [MA:0001361]
HOM M #1 Thymus [MA:0000142]
HOM M #1 Ear [MA:0000236]
HOM M #5 Stomach [MA:0000353]
HOM F #3 Salivary gland [MA:0000346] 2 0 Perivascular lymphocytic infiltrates
HOM M #5 Heart [MA:0000072]
HOM M #4 Brown adipose tissue [MA:0000057]
HOM M #1 Knee joint [MA:0000471]
HOM M #5 Trigeminal V ganglion [MA:0001080]
HOM F #3 Femur [MA:0001359]
HOM F #8 Brown adipose tissue [MA:0000057]
HOM M #5 Esophagus [MA:0000352]
HOM M #4 Adrenal gland [MA:0000116]
HOM M #1 Lymph node [MA:0000139]
HOM M #6 Testis [MA:0000411]
HOM M #4 Sciatic nerve [MA:0001172]
HOM M #5 Bone marrow [MA:0000134]
HOM F #2 Eye [MA:0000261]
HOM F #3 Tongue [MA:0000347]
HOM M #6 Gall bladder [MA:0000356]
HOM F #8 Tooth [MA:0000348]
HOM F #8 Sternum [MA:0001331]
HOM M #1 Urinary bladder [MA:0000380]
HOM F #3 Large intestine [MA:0000333]
HOM M #4 Epididymis [MA:0000397]
HOM M #5 Adrenal gland [MA:0000116]
HOM M #1 Seminal vesicle [MA:0000410]
HOM M #4 Eye [MA:0000261]
HOM F #3 Lung [MA:0000415]
HOM M #1 Pancreas [MA:0000120]
HOM F #7 Stomach [MA:0000353] 1 0 Glandular mucosal epithelial hyalinosis at the limiting ridge
HOM F #3 Small intestine [MA:0000337]
HOM F #3 Urinary bladder [MA:0000380]
HOM F #8 Gall bladder [MA:0000356]
HOM M #1 Lung [MA:0000415]
HOM F #3 Pancreas [MA:0000120] 1 0 perivascular lymphocytic infiltrates
HOM M #1 Tongue [MA:0000347]
HOM M #4 Bone marrow [MA:0000134]
HOM F #7 Eye [MA:0000261]
HOM F #2 Sciatic nerve [MA:0001172]
HOM F #3 Ovary [MA:0000384]
HOM M #6 Epididymis [MA:0000397]
HOM M #1 Femur [MA:0001359]
HOM F #3 Thymus [MA:0000142]
HOM M #5 Small intestine [MA:0000337]
HOM M #1 Tooth [MA:0000348]
HOM M #5 Seminal vesicle [MA:0000410]
HOM F #8 Thymus [MA:0000142]
HOM M #1 Skin [MA:0000151]
HOM M #4 Spinal cord [MA:0000216]
HOM F #8 Ear [MA:0000236]
HOM F #11 Eye [MA:0000261]
HOM F #7 Sciatic nerve [MA:0001172]
HOM F #8 Ovary [MA:0000384]
HOM F #7 Kidney [MA:0000368]
HOM F #2 Bone marrow [MA:0000134]
HOM M #6 Pancreas [MA:0000120]
HOM F #2 Sternum [MA:0001331]
HOM F #2 Ovary [MA:0000384]
HOM M #1 Brain [MA:0000168]
HOM F #2 Thymus [MA:0000142]
HOM M #1 Liver [MA:0000358]
HOM F #7 Spleen [MA:0000141]
HOM M #4 Large intestine [MA:0000333]
HOM F #7 Large intestine [MA:0000333]
HOM F #2 Ear [MA:0000236]
HOM M #5 Brown adipose tissue [MA:0000057]
HOM M #6 Salivary gland [MA:0000346]
HOM F #7 Sternum [MA:0001331]
HOM M #1 Tibia [MA:0001361]
HOM F #3 Sternum [MA:0001331]
HOM M #6 Nasal cavity [MA:0000284]
HOM F #2 Mammary gland [MA:0000145]
HOM M #5 Prostate gland [MA:0000404]
HOM M #4 Nasal cavity [MA:0000284]
HOM F #2 Tibia [MA:0001361]
HOM F #2 Spleen [MA:0000141]
HOM M #4 Salivary gland [MA:0000346] 1 0 perivascular lymphocytic infiltrates
HOM F #7 Nasal cavity [MA:0000284]
HOM F #2 Uterus [MA:0000389]
HOM M #6 Seminal vesicle [MA:0000410]
HOM F #7 Ear [MA:0000236]
HOM F #2 Lung [MA:0000415]
HOM M #6 Large intestine [MA:0000333]
HOM F #7 Spinal cord [MA:0000216]
HOM M #6 Small intestine [MA:0000337]
HOM F #2 Small intestine [MA:0000337]
HOM F #3 Tooth [MA:0000348]
HOM F #8 Kidney [MA:0000368]
HOM F #8 Spleen [MA:0000141]
HOM F #8 Pancreas [MA:0000120]
HOM M #4 Kidney [MA:0000368] 1 0 mild chronic lymphocytic pyelitis
HOM M #4 Spleen [MA:0000141]
HOM M #5 Pancreas [MA:0000120]
HOM F #7 Mammary gland [MA:0000145]
HOM M #4 Small intestine [MA:0000337]
HOM F #3 Tibia [MA:0001361]
HOM M #5 Thymus [MA:0000142]
HOM F #8 Salivary gland [MA:0000346]
HOM F #2 Nasal cavity [MA:0000284]
HOM F #10 Eye [MA:0000261] 1 0 persistent hyaloid vasculature; vitreal pigment
HOM M #1 Bone marrow [MA:0000134]
HOM F #7 Uterus [MA:0000389] 2 0 cystic endometrial hyperplasia
HOM M #5 Ear [MA:0000236]
HOM M #5 Salivary gland [MA:0000346]
HOM F #8 Uterus [MA:0000389]
HOM M #6 Spinal cord [MA:0000216]
HOM M #4 Lung [MA:0000415]
HOM M #6 Prostate gland [MA:0000404]
HOM F #8 Large intestine [MA:0000333]
HOM F #7 Small intestine [MA:0000337]
HOM F #3 Bone marrow [MA:0000134]
HOM M #6 Thymus [MA:0000142]
HOM M #4 Seminal vesicle [MA:0000410]
HOM F #7 Lung [MA:0000415]
HOM F #8 Mammary gland [MA:0000145]
HOM M #4 Pancreas [MA:0000120]
HOM F #2 Spinal cord [MA:0000216]
HOM M #6 Kidney [MA:0000368]
HOM F #7 Pancreas [MA:0000120] 1 0 perivascular lymphocytic infiltrates
HOM M #1 Stomach [MA:0000353]
HOM F #2 Kidney [MA:0000368]
HOM M #1 Epididymis [MA:0000397]
HOM M #5 Large intestine [MA:0000333]
HOM F #7 Ovary [MA:0000384]
HOM M #5 Spleen [MA:0000141]
HOM M #6 Lung [MA:0000415]
HOM F #8 Small intestine [MA:0000337]
HOM F #7 Thymus [MA:0000142]

Associated histopathology images

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