The experimental data set contains data observations from experiments conducted for the Europhenome project (see http://www.europhenome.org) and for the International Mouse Phenotype Consortium (IMPC) project (see http://www.mousephenotype.org). A record in this resource represents a single data point for an experiment. The list of experiments performed is documented in the International Mouse Phenotyping Resource of Standardised Screens (IMPREeSS, see http://www.mousephenotype.org/impress). Individual data points are associated to an IMPReSS Parameter. Parameters are organised into Procedures. Procedures are organised into Pipelines.
There are many ways to select and filter experimental data records, e.g.:
The experimental data REST API provides the fields described in the table below. Each field may be used for restricting the set of experimental data you wish to receive. The full SOLR select syntax is available for use in querying the REST API. See http://wiki.apache.org/solr/SolrQuerySyntax and http://wiki.apache.org/solr/CommonQueryParameters for a more complete list of query options.
|phenotyping_center||string||the name of the organisation that performed the experiment|
|gene_accession_id||string||the gene MGI ID (http://www.informatics.jax.org) of the mutant specimen used for the experiment|
|gene_symbol||string||the gene symbol of the mutant specimen used for the experiment|
|allele_accession_id||string||the allele MGI ID (http://www.informatics.jax.org) of the mutant specimen used for the experiment|
|allele_symbol||string||the allele symbol of the mutant specimen used for the experiment|
|zygosity||string||indicating the zygosity of the specimen|
|sex||string||indicating the sex of the specimen|
|biological_sample_group||string||indicating if the specimen was a member of the control group or the experimental group (also see metadata_group)|
|metadata||list of strings||Metadata is data that describes the conditions under which the data was collected (e.g. machine calibration date)|
|metadata_group||string||A collection of biological specimens that were all tested under the same experimental conditions. The experimental conditions are identified by the metadata_group tag. For more information, see the IMPReSS parameter documentation section Required For Data Analysis.|
|string||Deprecated. Please see genetic_background description|
|strain_accession_id||string||The background strain MGI accession ID (or IMPC ID when MGI accession is not available)|
|genetic_background||string||The background strain name of the specimen|
|pipeline_name||string||indicating the name of the pipeline where the experiment was conducted|
|pipeline_stable_id||string||indicating the IMPReSS ID of the pipeline|
|procedure_stable_id||string||indicating the IMPReSS ID of the procedure|
|procedure_name||string||indicating the full name of the procedure|
|parameter_stable_id||string||indicating the IMPReSS ID of the parameter|
|parameter_name||string||indicating the full name of the parameter|
|experiment_source_id||string||indicating the experiment identifier at the center that performed it|
|observation_type||string||indicating the type of parameter (categorical, unidimensional, multidimensional, time series, metadata)|
|colony_id||string||indicating the name of the colony of the specimen|
|date_of_birth||date||indicating the date the specimen was born|
|date_of_experiment||date||indicating the date the data was collected|
|weight||float||indicating the weight of the specimen observed|
|weight_parameter_stable_id||string||indicating the particular weight parameter|
|weight_date||date||indicating the actual date the weight was observed|
|weight_days_old||int||indicating the age in days of the specimen when the weight was observed|
|data_point||float||indicates the measured data value |
|order_index||int||indicating the order |
|dimension||string||indicating the dimension |
|time_point||string||indicating the time the data value was measured |
|discrete_point||float||indicating the discrete point |
|category||string||indicating the category to which the specimen has been classified |
|value||string||the value of the metadata |
 - For unidimensional parameters  - For multidimensional parameters  - For time series parameters  - For categorical parameters  - For metadata parameters
NOTE: Certain characters, most notably spaces and the "<" and ">" characters, must be url encoded (space = %20, < = %3c, > = %3e) for command line usage.
Retrieve all experimental results for parameter ESLIM_001_001_009 (Coat hair color) for colony Myo7aMyo7a<Hdb>
curl \ 'http://www.ebi.ac.uk/mi/impc/solr/experiment/select?q=parameter_stable_id:ESLIM_001_001_009%20AND%20colony_id:Myo7aMyo7a%3cHdb%3e&wt=json&indent=true'
Retrieve all experimental results for organisation WTSI
curl \ 'http://www.ebi.ac.uk/mi/impc/solr/experiment/select?q=phenotyping_center:WTSI&wt=json&indent=true'
Retrieve all unidimensional experimental results for Harwell for pipeline EUMODIC Pipeline 1
curl \ 'http://www.ebi.ac.uk/mi/impc/solr/experiment/select?q=phenotyping_center:%22MRC%20Harwell%22%20AND%20pipeline_name:%22EUMODIC%20Pipeline%201%22%20AND%20observation_type:unidimensional&wt=json&indent=true'