International Mouse Phenotyping Resource of Standardised Screens

Ontologies in Procedure: Slit Lamp ESLIM_014_001

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Parameter: Eye ESLIM_014_001_001

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal eye morphology	MP:0002092
	bilaterally absent		anophthalmia	MP:0001293
DECREASED
ABNORMAL			abnormal eye morphology	MP:0002092
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		eye [MA:0000261]	normal [PATO:0000461]
			eye [MA:0000261]	abnormal [PATO:0000460]
			right side [BSPO:0000007] eye [MA:0000261]	absent [PATO:0000462]
			eye [MA:0000261]	absent [PATO:0000462]
			left side [BSPO:0000000] eye [MA:0000261]	absent [PATO:0000462]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		eye [MA:0000261]	deviation(from_normal) [PATO:0000069]
			eye [MA:0000261]	deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] eye [MA:0000261]	count [PATO:0000070]
			eye [MA:0000261]	count [PATO:0000070]
			left side [BSPO:0000000] eye [MA:0000261]	count [PATO:0000070]

Parameter: Description ESLIM_014_001_002

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Eye size ESLIM_014_001_003

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally decreased size		microphthalmia	MP:0001297
	bilaterally increased size		macrophthalmia	MP:0001296
	left eye decreased size		microphthalmia	MP:0001297
	left eye increased size		macrophthalmia	MP:0001296
	right eye decreased size		microphthalmia	MP:0001297
	right eye increased size		macrophthalmia	MP:0001296
DECREASED
ABNORMAL			abnormal eye size	MP:0002697
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		eye [MA:0000261]	normal [PATO:0000461]
			right side [BSPO:0000007] eye [MA:0000261]	decreased size [PATO:0000587]
			right side [BSPO:0000007] eye [MA:0000261]	increased size [PATO:0000586]
			eye [MA:0000261]	decreased size [PATO:0000587]
			eye [MA:0000261]	increased size [PATO:0000586]
			left side [BSPO:0000000] eye [MA:0000261]	decreased size [PATO:0000587]
			left side [BSPO:0000000] eye [MA:0000261]	increased size [PATO:0000586]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		eye [MA:0000261]	deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] eye [MA:0000261]	size [PATO:0000117]
			right side [BSPO:0000007] eye [MA:0000261]	size [PATO:0000117]
			eye [MA:0000261]	size [PATO:0000117]
			eye [MA:0000261]	size [PATO:0000117]
			left side [BSPO:0000000] eye [MA:0000261]	size [PATO:0000117]
			left side [BSPO:0000000] eye [MA:0000261]	size [PATO:0000117]

Parameter: Eye (+) blood presence ESLIM_014_001_004

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED			eye hemorrhage	MP:0006203
	bilaterally present		eye hemorrhage	MP:0006203
	left eye present		eye hemorrhage	MP:0006203
	right eye present		eye hemorrhage	MP:0006203
DECREASED
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	absent		eye [MA:0000261] blood [MA:0000059]	absent [PATO:0000462]
DECREASED
ABNORMAL
INFERRED
TRAIT	absent		eye [MA:0000261] blood [MA:0000059]	count [PATO:0000070]
			right side [BSPO:0000007] eye [MA:0000261] blood [MA:0000059]	count [PATO:0000070]
			eye [MA:0000261] blood [MA:0000059]	count [PATO:0000070]
			left side [BSPO:0000000] eye [MA:0000261] blood [MA:0000059]	count [PATO:0000070]

Parameter: Eyelid closure ESLIM_014_001_005

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally closed		eyelids fail to open	MP:0005176
	closure incomplete bilaterally		narrow eye opening	MP:0005287
	left eye closed		eyelids fail to open	MP:0005176
	left eye closure incomplete		narrow eye opening	MP:0005287
	right eye closed		eyelids fail to open	MP:0005176
	right eye closure incomplete		narrow eye opening	MP:0005287
DECREASED
ABNORMAL			narrow eye opening	MP:0005287
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		eyelid [MA:0000268]	closure [PATO:0000136] normal [PATO:0000461]
			right side [BSPO:0000007] eyelid [MA:0000268]	closed [PATO:0000608]
			right side [BSPO:0000007] eyelid [MA:0000268]	closure incomplete [PATO:0000609]
			eyelid [MA:0000268]	closed [PATO:0000608]
			eyelid [MA:0000268]	closure incomplete [PATO:0000609]
			left side [BSPO:0000000] eyelid [MA:0000268]	closed [PATO:0000608]
			left side [BSPO:0000000] eyelid [MA:0000268]	closure incomplete [PATO:0000609]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		eyelid [MA:0000268]	closure [PATO:0000136] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] eyelid [MA:0000268]	closure [PATO:0000136]
			right side [BSPO:0000007] eyelid [MA:0000268]	closure [PATO:0000136]
			eyelid [MA:0000268]	closure [PATO:0000136]
			eyelid [MA:0000268]	closure [PATO:0000136]
			left side [BSPO:0000000] eyelid [MA:0000268]	closure [PATO:0000136]
			left side [BSPO:0000000] eyelid [MA:0000268]	closure [PATO:0000136]

Parameter: Cornea ESLIM_014_001_006

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		abnormal cornea morphology	MP:0001312
	left eye abnormal		abnormal cornea morphology	MP:0001312
	right eye abnormal		abnormal cornea morphology	MP:0001312
DECREASED
ABNORMAL			abnormal cornea morphology	MP:0001312
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		cornea [MA:0000266]	normal [PATO:0000461]
			right side [BSPO:0000007] cornea [MA:0000266]	abnormal [PATO:0000460]
			cornea [MA:0000266]	abnormal [PATO:0000460]
			left side [BSPO:0000000] cornea [MA:0000266]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		cornea [MA:0000266]	deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] cornea [MA:0000266]	deviation(from_normal) [PATO:0000069]
			cornea [MA:0000266]	deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] cornea [MA:0000266]	deviation(from_normal) [PATO:0000069]

Parameter: Cornea opacity ESLIM_014_001_007

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally opaque		corneal opacity	MP:0001314
	left eye opaque		corneal opacity	MP:0001314
	right eye opaque		corneal opacity	MP:0001314
DECREASED
ABNORMAL			corneal opacity	MP:0001314
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		cornea [MA:0000266]	opacity [PATO:0000957] normal [PATO:0000461]
			right side [BSPO:0000007] cornea [MA:0000266]	opaque [PATO:0000963]
			cornea [MA:0000266]	opaque [PATO:0000963]
			left side [BSPO:0000000] cornea [MA:0000266]	opaque [PATO:0000963]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		cornea [MA:0000266]	opacity [PATO:0000957] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] cornea [MA:0000266]	opacity [PATO:0000957]
			cornea [MA:0000266]	opacity [PATO:0000957]
			left side [BSPO:0000000] cornea [MA:0000266]	opacity [PATO:0000957]

Parameter: Cornea vascularisation ESLIM_014_001_008

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally present		corneal vascularization	MP:0005542
	left eye present		corneal vascularization	MP:0005542
	right eye present		corneal vascularization	MP:0005542
DECREASED
ABNORMAL			corneal vascularization	MP:0005542
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	absent		cornea [MA:0000266] blood vessel [MA:0000060]	absent [PATO:0000462]
DECREASED
ABNORMAL
INFERRED
TRAIT	absent		cornea [MA:0000266] blood vessel [MA:0000060]	count [PATO:0000070]
			right side [BSPO:0000007] cornea [MA:0000266] blood vessel [MA:0000060]	count [PATO:0000070]
			cornea [MA:0000266] blood vessel [MA:0000060]	count [PATO:0000070]
			left side [BSPO:0000000] cornea [MA:0000266] blood vessel [MA:0000060]	count [PATO:0000070]

Parameter: Lens ESLIM_014_001_009

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		abnormal lens morphology	MP:0001303
	left eye abnormal		abnormal lens morphology	MP:0001303
	right eye abnormal		abnormal lens morphology	MP:0001303
DECREASED
ABNORMAL			abnormal lens morphology	MP:0001303
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		lens [MA:0000275]	normal [PATO:0000461]
			right side [BSPO:0000007] lens [MA:0000275]	abnormal [PATO:0000460]
			lens [MA:0000275]	abnormal [PATO:0000460]
			left side [BSPO:0000000] lens [MA:0000275]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		lens [MA:0000275]	deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] lens [MA:0000275]	deviation(from_normal) [PATO:0000069]
			lens [MA:0000275]	deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] lens [MA:0000275]	deviation(from_normal) [PATO:0000069]

Parameter: Lens opacity ESLIM_014_001_010

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally opaque		cataracts	MP:0001304
	left eye opaque		cataracts	MP:0001304
	right eye opaque		cataracts	MP:0001304
DECREASED
ABNORMAL			cataracts	MP:0001304
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		lens [MA:0000275]	opacity [PATO:0000957] normal [PATO:0000461]
			right side [BSPO:0000007] lens [MA:0000275]	opaque [PATO:0000963]
			lens [MA:0000275]	opaque [PATO:0000963]
			left side [BSPO:0000000] lens [MA:0000275]	opaque [PATO:0000963]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		lens [MA:0000275]	opacity [PATO:0000957] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] lens [MA:0000275]	opacity [PATO:0000957]
			lens [MA:0000275]	opacity [PATO:0000957]
			left side [BSPO:0000000] lens [MA:0000275]	opacity [PATO:0000957]

Parameter: Iris/pupil ESLIM_014_001_011

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		abnormal iris morphology	MP:0001322
	left eye abnormal		abnormal iris morphology	MP:0001322
	right eye abnormal		abnormal iris morphology	MP:0001322
DECREASED
ABNORMAL			abnormal iris morphology	MP:0001322
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		iris [MA:0000273]	normal [PATO:0000461]
			right side [BSPO:0000007] iris [MA:0000273]	abnormal [PATO:0000460]
			iris [MA:0000273]	abnormal [PATO:0000460]
			left side [BSPO:0000000] iris [MA:0000273]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		iris [MA:0000273]	deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] iris [MA:0000273]	deviation(from_normal) [PATO:0000069]
			iris [MA:0000273]	deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] iris [MA:0000273]	deviation(from_normal) [PATO:0000069]

Parameter: Iris/pupil position ESLIM_014_001_012

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		abnormal placement of pupils	MP:0006241
	left eye abnormal		abnormal placement of pupils	MP:0006241
	right eye abnormal		abnormal placement of pupils	MP:0006241
DECREASED
ABNORMAL			abnormal placement of pupils	MP:0006241
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		iris [MA:0000273]	position [PATO:0000140] normal [PATO:0000461]
			right side [BSPO:0000007] iris [MA:0000273]	position [PATO:0000140] abnormal [PATO:0000460]
			iris [MA:0000273]	position [PATO:0000140] abnormal [PATO:0000460]
			left side [BSPO:0000000] iris [MA:0000273]	position [PATO:0000140] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		iris [MA:0000273]	position [PATO:0000140] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] iris [MA:0000273]	position [PATO:0000140] deviation(from_normal) [PATO:0000069]
			iris [MA:0000273]	position [PATO:0000140] deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] iris [MA:0000273]	position [PATO:0000140] deviation(from_normal) [PATO:0000069]

Parameter: Iris/pupil shape ESLIM_014_001_013

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		irregularly shaped pupil	MP:0001319
	bilaterally dilated		large pupils	MP:0001321
	left eye abnormal		irregularly shaped pupil	MP:0001319
	left eye dilated		large pupils	MP:0001321
	right eye abnormal		irregularly shaped pupil	MP:0001319
	right eye dilated		large pupils	MP:0001321
DECREASED
ABNORMAL			abnormal pupil morphology	MP:0001317
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		iris [MA:0000273]	shape [PATO:0000052] normal [PATO:0000461]
			right side [BSPO:0000007] iris [MA:0000273]	shape [PATO:0000052] abnormal [PATO:0000460]
			iris [MA:0000273]	shape [PATO:0000052] abnormal [PATO:0000460]
			right side [BSPO:0000007] pupil [MA:0001292]	dilated [PATO:0001571]
			pupil [MA:0001292]	dilated [PATO:0001571]
			left side [BSPO:0000000] iris [MA:0000273]	shape [PATO:0000052] abnormal [PATO:0000460]
			left side [BSPO:0000000] pupil [MA:0001292]	dilated [PATO:0001571]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		iris [MA:0000273]	shape [PATO:0000052] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] iris [MA:0000273]	shape [PATO:0000052] deviation(from_normal) [PATO:0000069]
			iris [MA:0000273]	shape [PATO:0000052] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] pupil [MA:0001292]	size [PATO:0000117]
			pupil [MA:0001292]	size [PATO:0000117]
			left side [BSPO:0000000] iris [MA:0000273]	shape [PATO:0000052] deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] pupil [MA:0001292]	size [PATO:0000117]

Parameter: Iris/pupil light response ESLIM_014_001_014

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		impaired pupillary reflex	MP:0006243
	left eye abnormal		impaired pupillary reflex	MP:0006243
	right eye abnormal		impaired pupillary reflex	MP:0006243
DECREASED
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		iris [MA:0000273] response to light stimulus [GO:0009416]	normal [PATO:0000461]
			right side [BSPO:0000007] iris [MA:0000273] response to light stimulus [GO:0009416]	abnormal [PATO:0000460]
			iris [MA:0000273] response to light stimulus [GO:0009416]	abnormal [PATO:0000460]
			left side [BSPO:0000000] iris [MA:0000273] response to light stimulus [GO:0009416]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		iris [MA:0000273] response to light stimulus [GO:0009416]	deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] iris [MA:0000273] response to light stimulus [GO:0009416]	deviation(from_normal) [PATO:0000069]
			iris [MA:0000273] response to light stimulus [GO:0009416]	deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] iris [MA:0000273] response to light stimulus [GO:0009416]	deviation(from_normal) [PATO:0000069]

Parameter: Iris pigment ESLIM_014_001_015

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	bilaterally abnormal		abnormal iris pigmentation	MP:0005102
	left eye abnormal		abnormal iris pigmentation	MP:0005102
	right eye abnormal		abnormal iris pigmentation	MP:0005102
DECREASED
ABNORMAL			abnormal iris pigmentation	MP:0005102
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		iris [MA:0000273]	PATO:0000020 [PATO:0000020] normal [PATO:0000461]
			right side [BSPO:0000007] iris [MA:0000273]	PATO:0000020 [PATO:0000020] abnormal [PATO:0000460]
			iris [MA:0000273]	PATO:0000020 [PATO:0000020] abnormal [PATO:0000460]
			left side [BSPO:0000000] iris [MA:0000273]	PATO:0000020 [PATO:0000020] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		iris [MA:0000273]	PATO:0000020 [PATO:0000020] deviation(from_normal) [PATO:0000069]
			right side [BSPO:0000007] iris [MA:0000273]	PATO:0000020 [PATO:0000020] deviation(from_normal) [PATO:0000069]
			iris [MA:0000273]	PATO:0000020 [PATO:0000020] deviation(from_normal) [PATO:0000069]
			left side [BSPO:0000000] iris [MA:0000273]	PATO:0000020 [PATO:0000020] deviation(from_normal) [PATO:0000069]

Parameter: Digitial image(s) ESLIM_014_001_016

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Equipment name ESLIM_014_001_801

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Equipment manufacturer ESLIM_014_001_802

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Equipment model ESLIM_014_001_803

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Copyright © The Medical Research Council 2013