International Mouse Phenotyping Resource of Standardised Screens

Ontologies in Procedure: Indirect ophthalmoscopy ESLIM_013_001

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Parameter: Eye ESLIM_013_001_001

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal eye morphology	MP:0002092
DECREASED
ABNORMAL			abnormal eye morphology	MP:0002092
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		eye [MA:0000261]	normal [PATO:0000461]
			eye [MA:0000261]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		eye [MA:0000261]	deviation(from_normal) [PATO:0000069]

Parameter: Description ESLIM_013_001_002

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Left retina ESLIM_013_001_003

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retina morphology	MP:0001325
DECREASED
ABNORMAL			abnormal retina morphology	MP:0001325
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		left side [BSPO:0000000] retina [MA:0000276]	normal [PATO:0000461]
			left side [BSPO:0000000] retina [MA:0000276]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		left side [BSPO:0000000] retina [MA:0000276]	deviation(from_normal) [PATO:0000069]

Parameter: Left retina pigmentation ESLIM_013_001_004

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retinal pigmentation	MP:0005103
DECREASED
ABNORMAL			abnormal retinal pigmentation	MP:0005103
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		left side [BSPO:0000000] retina [MA:0000276]	PATO:0000020 [PATO:0000020] normal [PATO:0000461]
			left side [BSPO:0000000] retina [MA:0000276]	PATO:0000020 [PATO:0000020] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		left side [BSPO:0000000] retina [MA:0000276]	PATO:0000020 [PATO:0000020] deviation(from_normal) [PATO:0000069]

Parameter: Left retina structure ESLIM_013_001_005

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	degenerate		abnormal retina morphology	MP:0001325
DECREASED
ABNORMAL			abnormal retina morphology	MP:0001325
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		left side [BSPO:0000000] retina [MA:0000276]	whole [PATO:0001446]
			left side [BSPO:0000000] retina [MA:0000276]	degenerate [PATO:0000639]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		left side [BSPO:0000000] retina [MA:0000276]	structure [PATO:0000141]

Parameter: Left optic disc ESLIM_013_001_006

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal optic disc morphology	MP:0008259
DECREASED
ABNORMAL			abnormal optic disc morphology	MP:0008259
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		left side [BSPO:0000000] optic disc [MA:0000278]	normal [PATO:0000461]
			left side [BSPO:0000000] optic disc [MA:0000278]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		left side [BSPO:0000000] optic disc [MA:0000278]	deviation(from_normal) [PATO:0000069]

Parameter: Right retina ESLIM_013_001_007

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retina morphology	MP:0001325
DECREASED
ABNORMAL			abnormal retina morphology	MP:0001325
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		right side [BSPO:0000007] retina [MA:0000276]	normal [PATO:0000461]
			right side [BSPO:0000007] retina [MA:0000276]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		right side [BSPO:0000007] retina [MA:0000276]	deviation(from_normal) [PATO:0000069]

Parameter: Right retina pigmentation ESLIM_013_001_008

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retinal pigmentation	MP:0005103
DECREASED
ABNORMAL			abnormal retinal pigmentation	MP:0005103
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		right side [BSPO:0000007] retina [MA:0000276]	PATO:0000020 [PATO:0000020] normal [PATO:0000461]
			right side [BSPO:0000007] retina [MA:0000276]	PATO:0000020 [PATO:0000020] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		right side [BSPO:0000007] retina [MA:0000276]	PATO:0000020 [PATO:0000020] deviation(from_normal) [PATO:0000069]

Parameter: Right retina structure ESLIM_013_001_009

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	degenerate		abnormal retina morphology	MP:0001325
DECREASED
ABNORMAL			abnormal retina morphology	MP:0001325
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		right side [BSPO:0000007] retina [MA:0000276]	whole [PATO:0001446]
			right side [BSPO:0000007] retina [MA:0000276]	degenerate [PATO:0000639]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		right side [BSPO:0000007] retina [MA:0000276]	structure [PATO:0000141]

Parameter: Right optic disc ESLIM_013_001_010

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal optic disc morphology	MP:0008259
DECREASED
ABNORMAL			abnormal optic disc morphology	MP:0008259
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		right side [BSPO:0000007] optic disc [MA:0000278]	normal [PATO:0000461]
			right side [BSPO:0000007] optic disc [MA:0000278]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		right side [BSPO:0000007] optic disc [MA:0000278]	deviation(from_normal) [PATO:0000069]

Parameter: Left eye blood vessels ESLIM_013_001_011

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retinal vasculature morphology	MP:0002792
DECREASED
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	normal [PATO:0000461]
			left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	deviation(from_normal) [PATO:0000069]

Parameter: Left eye blood vessels structure ESLIM_013_001_012

There are no Basic Ontology Annotation associations for this Parameter

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal appearance		left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	structure [PATO:0000141] normal [PATO:0000461]
			left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	structure [PATO:0000141] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal appearance		left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	structure [PATO:0000141] deviation(from_normal) [PATO:0000069]

Parameter: Left eye blood vessels pattern ESLIM_013_001_013

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retinal blood vessel pattern	MP:0010098
DECREASED
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	spatial pattern [PATO:0000060] normal [PATO:0000461]
			left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	spatial pattern [PATO:0000060] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		left side [BSPO:0000000] eye [MA:0000261] blood vessel [MA:0000060]	spatial pattern [PATO:0000060] deviation(from_normal) [PATO:0000069]

Parameter: Right eye blood vessels ESLIM_013_001_014

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retinal vasculature morphology	MP:0002792
DECREASED
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	normal [PATO:0000461]
			right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	deviation(from_normal) [PATO:0000069]

Parameter: Right eye blood vessels structure ESLIM_013_001_015

There are no Basic Ontology Annotation associations for this Parameter

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal appearance		right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	structure [PATO:0000141] normal [PATO:0000461]
			right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	structure [PATO:0000141] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal appearance		right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	structure [PATO:0000141] deviation(from_normal) [PATO:0000069]

Parameter: Right eye blood vessels pattern ESLIM_013_001_016

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED	abnormal		abnormal retinal blood vessel pattern	MP:0010098
DECREASED
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED	normal		right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	spatial pattern [PATO:0000060] normal [PATO:0000461]
			right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	spatial pattern [PATO:0000060] abnormal [PATO:0000460]
DECREASED
ABNORMAL
INFERRED
TRAIT	normal		right side [BSPO:0000007] eye [MA:0000261] blood vessel [MA:0000060]	spatial pattern [PATO:0000060] deviation(from_normal) [PATO:0000069]

Parameter: Digitial image(s) ESLIM_013_001_017

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Equipment name ESLIM_013_001_801

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Equipment manufacturer ESLIM_013_001_802

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Equipment model ESLIM_013_001_803

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Topical agent(s) ESLIM_013_001_804

There are no Basic Ontology Annotation associations for this Parameter

There are no Entity-Quality Ontology associations for this Parameter

Parameter: Body weight ESLIM_013_001_018

	Option	Increment	Ontology Term	Ontology ID	Sex
INCREASED			increased body weight	MP:0001260
DECREASED			decreased body weight	MP:0001262
ABNORMAL
INFERRED

	Option	Increment	Entities	Qualities	Sex
INCREASED			adult mouse [MA:0002405]	increased weight [PATO:0000582]
DECREASED			adult mouse [MA:0002405]	decreased weight [PATO:0000583]
ABNORMAL
INFERRED
TRAIT			adult mouse [MA:0002405]	weight [PATO:0000128]

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