Phenotype: abnormal visceral yolk sac morphology

Definition
any structural anomaly of the extraembryonic tissue membrane, formed from the visceral endoderm and the extraembryonic mesoderm, which is located ventral to the embryonic disc and is connected to the presumptive midgut of the embryo; the yolk that it contains is the site of embryonic hematopoiesis and vitelline circulation is involved in early embryonic circulation; it is the origin of the primordial germ cells
Synonyms
abnormal umbilical vesicle morphology,  abnormal vitelline sac morphology,  abnormal secondary yolk sac morphology
0%
of tested genes
0
significant genes
0
tested genes

IMPC Gene variants with abnormal visceral yolk sac morphology

Total number of significant genotype-phenotype associations: 97

Gene / Allele Zygosity Sex Life Stage Phenotype Parameter Phenotyping
Center
P Value
Adar
Adartm1b(EUCOMM)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
JAX
IMPC
0.00
Alg10b
Alg10btm1.1(KOMP)Vlcg
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Alg10b
Alg10btm1.1(KOMP)Vlcg
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Aph1a
Aph1atm1b(KOMP)Mbp
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Asb2
Asb2tm2b(KOMP)Wtsi
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
KMPC
IMPC
0.00
Atp1b1
Atp1b1em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Chchd1
Chchd1tm1.1(KOMP)Vlcg
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Eng
Engem1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Faf2
Faf2em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Glmn
Glmnem1(IMPC)Bay
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Glmn
Glmnem1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Gna13
Gna13tm1b(KOMP)Wtsi
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Got2
Got2em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Gxylt1
Gxylt1em1(IMPC)Bay
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Gxylt1
Gxylt1em1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Ift52
Ift52em1(IMPC)Bay
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Ift52
Ift52em1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Isyna1
Isyna1em1(IMPC)Bay
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Isyna1
Isyna1em1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Ly6e
Ly6eem1(IMPC)Bay
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
BCM
IMPC
0.00
Med16
Med16tm1b(KOMP)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Med1
Med1tm3b(EUCOMM)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Mtap
Mtapem1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Mthfd2
Mthfd2tm1b(EUCOMM)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
BCM
IMPC
0.00
Myo18a
Myo18atm1b(KOMP)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Ndufs7
Ndufs7tm1b(EUCOMM)Hmgu
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Nkapd1
Nkapd1em1(IMPC)Mbp
HET E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Nog
Nogem1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Nr6a1
Nr6a1tm1b(EUCOMM)Wtsi
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Nr6a1
Nr6a1tm1b(EUCOMM)Wtsi
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Nsmce2
Nsmce2em1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Opa1
Opa1em1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Phgdh
Phgdhtm1b(KOMP)Wtsi
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
KMPC
IMPC
0.00
Piezo1
Piezo1tm1b(KOMP)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Pigq
Pigqtm2b(EUCOMM)Wtsi
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Pigq
Pigqtm2b(EUCOMM)Wtsi
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Psmg1
Psmg1tm1b(KOMP)Wtsi
HET E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Psph
Psphtm1.1(KOMP)Vlcg
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Rad9a
Rad9atm1.1(KOMP)Wtsi
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Rad9a
Rad9atm1.1(KOMP)Wtsi
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Rb1cc1
Rb1cc1em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Romo1
Romo1em1(IMPC)Kmpc
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
KMPC
IMPC
0.00
Scrib
Scribtm1b(NCOM)Mfgc
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Sptan1
Sptan1em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
St14
St14tm1.1(KOMP)Vlcg
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Sufu
Sufutm1b(KOMP)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Tbx20
Tbx20em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Tbx4
Tbx4tm4b(EUCOMM)Wtsi
HOM E12.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E12.5
TCP
IMPC
0.00
Tmem100
Tmem100tm1e.1(KOMP)Wtsi
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
TCP
IMPC
0.00
Ubp1
Ubp1tm1b(KOMP)Mbp
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Uggt1
Uggt1em1(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Uqcc3
Uqcc3em1(IMPC)Bay
HOM E9.5 pale yolk sac Pale yolk sac
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Uqcc3
Uqcc3em1(IMPC)Bay
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00
Vcan
Vcanem2(IMPC)Mbp
HOM E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
UC Davis
IMPC
0.00
Vps54
Vps54em1(IMPC)Bay
HET E9.5 abnormal visceral yolk sac morphology Visceral yolk sac morphology
Gross Morphology Embryo E9.5
BCM
IMPC
0.00

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 The way we measure

 Phenotype associations stats

3.99% of tested genes with null mutations on a B6N genetic background have a phenotype association to abnormal visceral yolk sac morphology (46/1153)

5.25% females (38/724) 5.39% males (39/724)

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