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Phenotype: abnormal somite shape

Definition
anomaly in the characteristic surface outline or contour of mesodermal clusters that are arranged segmentally along the anterior posterior axis of an embryo
Synonyms
irregular somite shape
Significant gene associations The way we measure Phenotype stats
0%
of tested genes
0
significant genes
0
tested genes

IMPC Gene variants with abnormal somite shape

Total number of significant genotype-phenotype associations: 43

Gene / Allele Zygosity Sex Life Stage Phenotype Parameter Phenotyping
Center		 P Value
Alg10b
Alg10btm1.1(KOMP)Vlcg 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Ankmy2
Ankmy2em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Atp1b1
Atp1b1em1(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Atp1b3
Atp1b3em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Ctbp2
Ctbp2em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Eng
Engem1(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Flnc
Flncem1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Glmn
Glmnem1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Isyna1
Isyna1em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Krit1
Krit1tm1.1(KOMP)Vlcg 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Nog
Nogem1(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Nr6a1
Nr6a1tm1b(EUCOMM)Wtsi 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Opa1
Opa1em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Pdhb
Pdhbem1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Pigq
Pigqtm2b(EUCOMM)Wtsi 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Rad9a
Rad9atm1.1(KOMP)Wtsi 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Sfr1
Sfr1em1(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Slc30a9
Slc30a9em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Tbx20
Tbx20em1(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Tgds
Tgdsem1(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Tmem70
Tmem70em2(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Traf3ip1
Traf3ip1em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00
Vcan
Vcanem2(IMPC)Mbp 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 UC Davis
IMPC		 0.00
Zmym2
Zmym2em1(IMPC)Bay 		HOM E9.5 abnormal somite shape Somite Morphology
Gross Morphology Embryo E9.5		 BCM
IMPC		 0.00

Download data as:   TSV   XLS

 The way we measure

Procedure
Gross Morphology Embryo E9.5

 Phenotype associations stats

3.22% of tested genes with null mutations on a B6N genetic background have a phenotype association to abnormal somite shape (24/746)

6.06% females (22/363) 5.79% males (21/363)

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